Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.6e-97 358.6 170 100.0
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.2e-95 351.7 170 98.8
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.2e-95 351.7 170 98.8
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.2e-95 351.7 170 98.8
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.2e-95 351.7 170 98.8
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 3.2e-95 351.7 170 98.8
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 7.2e-95 350.5 170 98.2
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.2e-95 350.5 170 98.2
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.6e-94 349.4 170 98.2
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.6e-94 347.8 170 97.6
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 5.1e-93 344.4 167 98.2
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 6.7e-93 344.0 170 97.1
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 6.7e-93 344.0 170 97.1
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 1.1e-92 343.2 170 96.5
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.1e-92 343.2 170 96.5
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 1.1e-92 343.2 170 96.5
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 2.0e-92 342.4 170 96.5
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.3e-92 341.7 169 97.0
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.3e-92 341.3 169 96.4
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 9.7e-92 340.1 170 96.5
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 9.7e-92 340.1 170 96.5
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.7e-91 339.3 170 95.3
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.7e-91 339.3 170 95.3
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 2.2e-91 339.0 170 95.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 3.7e-91 338.2 170 95.9
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 3.7e-91 338.2 170 95.9
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.3e-91 337.4 170 95.9
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.3e-91 337.4 170 95.9
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 8.2e-91 337.0 170 94.7
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.8e-90 335.9 170 95.3
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 5.3e-90 334.3 165 97.0
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-89 332.8 170 94.7
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-89 332.8 170 94.7
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-89 332.8 170 94.7
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 1.5e-89 332.8 170 94.7
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 2.0e-89 332.4 168 95.2
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 2.0e-89 332.4 168 95.2
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.3e-88 329.7 168 94.6
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.9e-88 328.6 170 93.5
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-88 327.8 170 92.4
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.5e-88 327.0 165 93.9
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 1.4e-87 326.2 164 94.5
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 1.4e-87 326.2 164 94.5
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.9e-87 325.9 169 94.1
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.5e-87 325.5 165 93.3
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-86 322.8 170 91.8
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 6.1e-86 320.9 165 92.1
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.8e-85 319.3 170 91.2
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-85 318.9 163 93.3
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 3.0e-85 318.5 170 91.2
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 6.7e-85 317.4 170 90.6
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.1e-84 316.6 165 92.1
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.1e-84 316.6 166 91.6
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 9.7e-84 313.5 168 90.5
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.2e-83 310.5 158 93.7
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-82 309.7 164 90.2
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-80 301.6 170 85.3
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 9.4e-79 297.0 164 87.8
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-78 294.7 169 85.8
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 8.0e-78 293.9 144 97.2
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 1.5e-76 289.7 170 83.5
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 9.7e-76 287.0 153 91.5
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-75 286.6 170 82.4
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 2.2e-75 285.8 163 84.7
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.2e-75 285.8 144 95.8
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.1e-74 283.5 141 96.5
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.1e-74 283.5 141 96.5
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 3.1e-74 282.0 167 84.4
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-72 274.6 147 89.8
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-71 271.9 138 94.9
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 9.4e-71 270.4 135 95.6
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.6e-70 268.5 170 80.6
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-69 265.0 135 93.3
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 6.8e-69 264.2 144 88.9
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 7.5e-68 260.8 143 88.1
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-67 260.0 141 87.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-67 258.5 138 90.6
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-67 258.5 138 90.6
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-67 257.7 132 92.4
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 7.0e-66 254.2 131 91.6
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-64 250.0 165 73.9
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-64 249.6 148 82.4
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 6.5e-64 247.7 172 76.7
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-62 240.7 136 86.8
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 8.8e-61 237.3 130 89.2
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-57 226.1 138 83.3
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-57 224.9 134 83.6
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-56 223.0 127 85.8
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-56 222.2 133 83.5
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-55 219.5 114 91.2
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 1.2e-52 210.3 114 89.5
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 5.7e-52 208.0 132 79.5
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 5.7e-52 208.0 99 98.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.3e-51 206.8 109 90.8
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 3.7e-51 205.3 100 96.0
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 1.8e-50 203.0 132 78.8
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 3.2e-50 202.2 96 97.9
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 1.6e-49 199.9 97 95.9
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.0e-49 199.5 101 93.1
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 2.7e-49 199.1 99 94.9
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.0e-48 197.2 153 60.1
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-48 196.4 115 85.2
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 6.6e-48 194.5 115 84.3
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 6.6e-48 194.5 138 72.5
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-46 189.1 100 89.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 6.2e-46 188.0 146 58.9
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 7.5e-44 181.0 101 86.1
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-43 179.9 94 89.4
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 2.2e-43 179.5 111 82.9
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.7e-43 178.7 99 85.9
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.2e-42 174.1 127 70.9
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 7.8e-41 171.0 164 59.1
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 1.0e-40 170.6 79 97.5
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 7.3e-39 164.5 89 88.8
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-39 164.5 170 52.9
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 6.2e-38 161.4 129 66.7
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-37 160.6 132 63.6
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.9e-37 157.5 91 83.5
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-36 157.1 87 83.9
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-36 157.1 87 83.9
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 1.9e-34 149.8 74 94.6
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.9e-34 149.8 74 94.6
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 1.9e-34 149.8 74 91.9
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-34 148.3 80 86.2
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 1.2e-33 147.1 74 93.2
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 1.2e-33 147.1 74 93.2
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 1.2e-33 147.1 74 93.2
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 1.2e-33 147.1 74 93.2
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-33 144.4 75 92.0
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 3.9e-32 142.1 69 94.2
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.6e-32 141.0 144 56.2
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-31 140.6 74 89.2
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-31 139.8 74 87.8
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.5e-31 139.4 149 49.0
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.5e-31 137.5 72 88.9
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-31 137.5 74 87.8
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-31 137.5 135 59.3
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-31 137.5 135 59.3
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 137.1 74 86.5
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-30 136.7 74 86.5
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-30 134.4 72 87.5
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-29 133.3 70 88.6
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 132.9 72 86.1
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 132.9 74 85.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-28 130.6 74 85.1
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.5e-28 130.2 74 82.4
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.5e-28 130.2 122 58.2
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.6e-28 129.4 92 70.7
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-28 128.6 74 83.8
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-28 127.5 71 85.9
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 8.4e-27 124.4 64 92.2
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-26 123.6 74 81.1
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.3e-24 116.3 69 82.6
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 7.3e-23 111.3 59 93.2
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.1e-22 109.8 64 81.2
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 3.6e-22 109.0 61 90.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 9.9e-20 100.9 47 95.7
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.2e-18 95.9 49 89.8
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-17 93.6 69 68.1
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-16 89.7 58 75.9
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-16 89.7 111 49.5
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.3e-15 85.5 44 90.9
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 6.9e-13 78.2 36 100.0
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.9e-12 74.3 45 75.6
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-12 74.3 50 72.0
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 8.4e-11 71.2 100 47.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 2.1e-09 66.6 33 90.9
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 3.5e-09 65.9 29 100.0
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 3.0e-08 62.8 30 93.3
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 3.9e-08 62.4 30 90.0
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-08 61.6 34 82.4
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-08 61.2 33 87.9
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 3.7e-06 55.8 97 35.1
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 3.7e-06 55.8 97 35.1
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.7e-06 55.8 97 35.1
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 8.1e-06 54.7 60 41.7


User provided reference genes

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