Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-69 266.2 129 100.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.9e-68 262.3 129 97.7
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 9.7e-68 260.0 129 97.7
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 9.7e-68 260.0 129 97.7
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.6e-67 259.2 129 96.9
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 2.8e-67 258.5 129 96.9
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 2.8e-67 258.5 129 96.9
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 3.7e-67 258.1 129 96.9
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 3.7e-67 258.1 129 96.1
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 4.8e-67 257.7 129 96.9
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 6.3e-67 257.3 129 96.1
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 3.8e-64 248.1 129 91.5
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.1e-58 229.9 115 94.8
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.2e-53 211.1 158 67.7
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 7.4e-52 207.2 112 86.6
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.3e-51 206.5 112 85.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.7e-51 206.1 112 86.6
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.8e-51 205.3 112 84.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 6.3e-51 204.1 112 83.9
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 1.1e-50 203.4 112 84.8
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.4e-50 203.0 112 84.8
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.4e-50 203.0 112 83.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.4e-50 203.0 111 84.7
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 1.8e-50 202.6 125 78.4
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.8e-50 202.6 110 86.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 3.1e-50 201.8 112 84.8
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.1e-50 201.4 112 81.2
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 4.1e-50 201.4 112 83.9
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 7.0e-50 200.7 127 75.6
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 7.0e-50 200.7 112 83.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 7.0e-50 200.7 112 83.0
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 9.1e-50 200.3 112 81.2
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.2e-49 199.9 112 82.1
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.2e-49 199.9 112 81.2
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.6e-49 199.5 112 81.2
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 81.2
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 80.4
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 82.1
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.6e-49 198.7 112 83.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 2.6e-49 198.7 112 82.1
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 3.5e-49 198.4 112 80.4
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 4.5e-49 198.0 123 78.0
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.5e-49 198.0 115 80.9
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 4.5e-49 198.0 112 82.1
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 4.5e-49 198.0 112 81.2
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 5.9e-49 197.6 112 82.1
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 5.9e-49 197.6 112 83.0
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 5.9e-49 197.6 112 82.1
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 1.0e-48 196.8 112 82.1
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.3e-48 196.4 112 81.2
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.7e-48 196.1 112 81.2
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 2.2e-48 195.7 112 80.4
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 2.2e-48 195.7 112 79.5
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.9e-48 195.3 112 80.4
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.9e-48 195.3 112 81.2
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 6.5e-48 194.1 112 79.5
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 8.5e-48 193.7 112 80.4
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 8.5e-48 193.7 112 79.5
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.1e-47 193.4 112 78.6
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 1.1e-47 193.4 122 76.2
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.9e-47 192.6 112 77.7
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.9e-47 192.6 112 81.2
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.9e-47 192.6 112 80.4
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 2.5e-47 192.2 112 80.4
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 5.5e-47 191.0 112 78.6
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 7.2e-47 190.7 112 80.4
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 2.1e-46 189.1 112 76.8
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.1e-46 189.1 112 79.5
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 2.7e-46 188.7 112 80.4
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 3.6e-46 188.3 111 77.5
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 3.6e-46 188.3 112 76.8
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 4.7e-46 188.0 112 78.6
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 6.1e-46 187.6 112 75.9
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 6.1e-46 187.6 111 78.4
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 8.0e-46 187.2 114 76.3
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.0e-45 186.8 112 75.9
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 1.4e-45 186.4 145 64.8
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 1.8e-45 186.0 112 78.6
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.4e-44 181.4 124 70.2
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 7.5e-44 180.6 127 70.9
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 7.5e-44 180.6 139 64.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.2e-43 179.1 127 70.1
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.2e-43 179.1 127 70.1
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.7e-43 178.3 112 74.1
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.7e-43 178.3 112 74.1
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 3.7e-43 178.3 112 74.1
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.1e-42 176.8 126 67.5
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.4e-42 176.4 98 85.7
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 5.3e-42 174.5 107 74.8
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 5.3e-42 174.5 107 74.8
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 7.0e-42 174.1 100 81.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 2.0e-41 172.6 110 74.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 1.6e-38 162.9 98 77.6
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 8.0e-38 160.6 98 77.6
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.0e-37 160.2 163 51.5
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.3e-37 159.1 96 77.1
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 4.0e-37 158.3 142 58.5
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 5.2e-37 157.9 99 72.7
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.8e-36 153.7 73 98.6
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.2e-35 152.5 73 98.6
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 2.2e-35 152.5 108 65.7
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 6.3e-35 151.0 73 95.9
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.3e-35 150.6 73 97.3
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.7e-33 145.6 79 81.0
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.5e-33 145.2 111 57.7
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 5.9e-33 144.4 79 82.3
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 7.7e-33 144.1 125 60.0
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 5.0e-32 141.4 88 69.3
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.6e-32 140.6 98 67.3
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 1.1e-31 140.2 79 81.0
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 2.1e-30 136.0 86 76.7
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.8e-26 122.9 108 51.9
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.4e-26 122.5 125 53.6
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 7.0e-26 120.9 75 77.3
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 3.5e-25 118.6 87 62.1
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 7.8e-25 117.5 75 68.0
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 2.3e-24 115.9 65 78.5
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 2.9e-24 115.5 78 62.8
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 7.3e-23 110.9 69 78.3
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 2.6e-20 102.4 63 71.4
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.0e-16 90.5 50 80.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.0e-16 90.5 84 54.8
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.0e-16 90.5 84 54.8
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 1.0e-16 90.5 158 41.1
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 6.8e-13 77.8 40 85.0
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 6.8e-13 77.8 54 74.1
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 2.6e-12 75.9 50 82.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 2.6e-12 75.9 50 82.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 2.3e-08 62.8 37 70.3
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 2.8e-06 55.8 65 44.6


User provided reference genes

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