Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-67 259.6 131 100.0
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.1e-63 246.5 131 95.4
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-61 239.2 130 93.1
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-60 236.1 130 91.5
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 7.5e-60 233.8 132 90.9
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 7.5e-60 233.8 132 90.9
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.7e-59 232.6 130 91.5
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.7e-59 232.6 130 91.5
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.7e-59 232.6 130 91.5
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.4e-58 227.6 131 89.3
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.4e-58 227.6 131 89.3
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 7.1e-58 227.3 131 89.3
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.7e-56 222.6 134 86.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.1e-56 221.1 134 86.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.8e-53 212.6 134 84.3
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.5e-49 198.4 132 78.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.5e-47 192.2 121 79.3
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 7.3e-47 190.7 134 79.9
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 2.1e-46 189.1 132 78.8
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.1e-45 186.8 132 78.8
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.4e-45 185.7 133 71.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 4.0e-45 184.9 131 75.6
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 5.2e-45 184.5 132 78.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 6.8e-45 184.1 133 76.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.2e-44 183.3 131 72.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.2e-44 183.3 131 72.5
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.5e-44 183.0 121 81.0
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.5e-44 183.0 132 77.3
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 2.0e-44 182.6 131 77.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 76.5
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.0e-44 182.6 133 76.7
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 75.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.6e-44 182.2 131 72.5
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.6e-44 182.2 119 77.3
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 5.8e-44 181.0 133 75.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 7.6e-44 180.6 131 74.8
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.3e-43 179.9 117 79.5
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.3e-43 179.9 119 76.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-43 179.5 122 73.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.7e-43 179.5 132 75.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.7e-43 179.5 132 75.0
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.2e-43 179.1 132 75.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.2e-43 179.1 132 75.0
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.2e-43 179.1 133 73.7
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.2e-43 179.1 117 79.5
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.2e-43 179.1 132 74.2
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.9e-43 178.7 131 70.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.9e-43 178.7 131 74.0
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.9e-43 178.7 132 72.7
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.8e-43 178.3 131 71.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 4.9e-43 177.9 132 74.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 6.4e-43 177.6 136 73.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.4e-43 177.6 120 73.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 6.4e-43 177.6 131 74.0
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 6.4e-43 177.6 131 74.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.4e-43 177.6 121 75.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 74.0
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-42 176.8 121 74.4
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.4e-42 176.4 127 69.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 72.0
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.9e-42 176.0 131 71.8
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-42 176.0 132 72.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.4e-42 175.6 132 74.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.1e-42 174.1 132 72.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 69.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 73.5
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.6e-41 172.9 123 72.4
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.1e-41 172.6 132 72.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.7e-41 172.2 119 73.1
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 4.6e-41 171.4 131 69.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 6.0e-41 171.0 119 71.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 7.8e-41 170.6 119 77.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 7.8e-41 170.6 132 69.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.0e-40 170.2 112 77.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.0e-40 170.2 125 72.8
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.0e-40 170.2 122 72.1
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.0e-40 170.2 120 76.7
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.0e-40 170.2 131 71.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.0e-40 170.2 131 69.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 120 72.5
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 132 70.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.7e-40 169.5 120 72.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-40 169.5 119 74.8
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 72.5
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 71.8
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.3e-40 169.1 131 69.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.3e-40 169.1 117 76.1
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.0e-40 168.7 131 69.5
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.1e-40 167.9 130 66.2
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.6e-40 167.5 129 73.6
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 6.6e-40 167.5 120 75.0
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.7e-40 167.2 119 73.9
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-39 166.8 119 76.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.5e-39 166.4 117 72.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.9e-39 166.0 132 67.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.3e-39 164.9 130 66.9
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.6e-39 163.7 132 71.2
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.6e-39 163.7 123 71.5
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.3e-38 163.3 131 72.5
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.3e-38 163.3 130 69.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.6e-38 161.8 111 73.9
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 4.8e-38 161.4 132 69.7
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.8e-38 161.4 129 68.2
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 4.8e-38 161.4 105 81.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 6.2e-38 161.0 132 67.4
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.1e-38 160.6 129 67.4
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.1e-38 160.6 129 67.4
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.1e-38 160.6 111 75.7
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.4e-37 159.8 129 69.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.4e-37 159.8 132 67.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.4e-37 159.8 134 63.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.4e-37 159.8 134 63.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.4e-37 159.1 104 81.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 3.1e-37 158.7 118 71.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 9.0e-37 157.1 128 64.1
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.6e-36 155.6 99 82.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.4e-36 155.2 91 82.4
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 4.4e-36 154.8 99 82.8
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.8e-36 154.5 134 63.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 7.6e-36 154.1 111 73.0
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 9.9e-36 153.7 115 72.2
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.3e-35 153.3 114 70.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-35 152.5 124 70.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.9e-35 152.1 121 69.4
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.9e-35 152.1 114 69.3
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 6.4e-35 151.0 111 70.3
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.4e-34 149.8 111 70.3
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.9e-34 149.4 111 69.4
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 9.3e-34 147.1 85 85.9
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.5e-31 139.8 87 81.6
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.6e-30 136.3 120 65.8
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 8.1e-30 134.0 84 78.6
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.4e-29 132.5 75 86.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.1e-29 132.1 120 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 5.3e-29 131.3 133 56.4
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 113 62.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.2e-27 125.9 78 80.8
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-25 119.8 69 87.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.5e-25 118.6 121 57.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.8e-24 116.3 129 55.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.5e-23 113.2 87 65.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.5e-23 112.5 132 55.3
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.6e-23 111.3 69 81.2
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 7.4e-23 110.9 94 62.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.8e-22 108.2 99 65.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.4e-21 106.7 126 54.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-20 101.7 84 64.3
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.8e-19 98.6 106 56.6
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.1e-18 97.1 91 53.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.7e-17 92.4 98 54.1
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-17 91.7 46 100.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.7e-16 87.8 71 60.6
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 8.7e-16 87.4 101 49.5
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.4e-13 80.1 65 56.9
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.8e-06 55.8 33 75.8


User provided reference genes

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