Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 4.1e-90 334.7 173 100.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 8.1e-86 320.5 173 94.8
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 3.4e-84 315.1 173 93.1
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 5.8e-84 314.3 173 93.1
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 7.6e-84 313.9 173 93.6
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.3e-83 313.2 173 93.6
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.2e-83 312.4 173 91.3
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 3.8e-83 311.6 173 93.1
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.1e-82 310.1 174 93.1
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 3.2e-82 308.5 173 92.5
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 3.2e-82 308.5 173 92.5
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 4.2e-82 308.1 173 91.9
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 3.0e-72 275.4 164 84.8
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.2e-59 232.6 168 67.9
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.2e-59 232.6 173 65.3
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.1e-58 230.3 165 69.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.1e-58 230.3 165 69.1
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.9e-58 229.6 160 70.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 5.5e-58 228.0 168 67.9
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 7.1e-58 227.6 166 66.9
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 7.1e-58 227.6 169 66.9
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 7.1e-58 227.6 165 68.5
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.2e-57 226.9 169 67.5
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.7e-57 225.7 167 67.1
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 2.7e-57 225.7 168 66.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 3.5e-57 225.3 161 69.6
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 4.6e-57 224.9 173 65.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 6.0e-57 224.6 168 64.9
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 7.9e-57 224.2 170 67.6
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 1.0e-56 223.8 164 67.7
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.0e-56 223.8 159 68.6
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.3e-56 223.4 164 68.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.3e-56 222.6 167 68.3
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 5.1e-56 221.5 166 65.1
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 6.7e-56 221.1 164 67.1
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 6.7e-56 221.1 167 62.9
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.1e-55 220.3 161 65.8
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 7.4e-55 217.6 167 64.7
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 9.6e-55 217.2 168 63.7
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.3e-54 216.9 163 66.9
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.6e-54 216.5 163 64.4
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.8e-54 215.7 162 64.8
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.8e-54 215.7 162 64.8
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.8e-54 214.9 166 63.3
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 4.8e-54 214.9 162 66.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.4e-53 213.4 163 67.5
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.4e-53 213.4 163 67.5
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.4e-53 213.4 162 68.5
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.8e-53 213.0 173 60.1
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 4.1e-53 211.8 167 62.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 4.1e-53 211.8 172 64.0
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 4.1e-53 211.8 167 60.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.3e-53 211.5 156 65.4
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.9e-53 211.1 163 66.9
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.2e-52 210.3 156 65.4
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.2e-52 210.3 169 65.7
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.5e-52 209.9 166 61.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.6e-52 209.1 167 62.9
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 2.6e-52 209.1 155 69.0
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 3.4e-52 208.8 168 64.3
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 4.5e-52 208.4 173 57.2
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 5.8e-52 208.0 163 63.8
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 5.8e-52 208.0 174 62.1
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.3e-51 206.8 163 65.0
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.9e-51 205.7 161 67.1
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 5.0e-51 204.9 168 61.3
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 6.5e-51 204.5 159 61.6
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 8.4e-51 204.1 159 62.9
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 8.4e-51 204.1 141 68.8
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-50 202.2 161 61.5
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-50 202.2 161 61.5
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 3.2e-50 202.2 162 61.7
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.5e-50 201.4 158 63.3
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 9.3e-50 200.7 163 60.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.2e-49 200.3 135 76.3
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.7e-49 199.1 154 63.6
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.7e-49 199.1 162 60.5
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.5e-49 198.7 149 65.1
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 6.1e-49 198.0 175 60.0
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.0e-48 197.2 164 62.2
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 1.8e-48 196.4 174 56.9
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.0e-48 195.7 162 62.3
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 8.7e-48 194.1 176 57.4
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 8.7e-48 194.1 176 58.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.5e-47 193.4 154 63.6
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.9e-47 193.0 154 60.4
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 2.5e-47 192.6 197 50.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 7.4e-47 191.0 151 62.9
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.3e-46 190.3 159 57.9
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 8.2e-46 187.6 137 67.9
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 8.2e-46 187.6 169 56.2
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.4e-45 186.8 156 60.3
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 3.1e-45 185.7 231 46.3
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 4.1e-45 185.3 154 59.1
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 5.3e-45 184.9 131 69.5
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.2e-44 183.7 168 57.1
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.5e-44 183.3 163 60.1
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 7.7e-44 181.0 145 62.1
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.1e-42 177.2 143 61.5
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 7.2e-42 174.5 144 61.8
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 9.4e-42 174.1 156 58.3
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 2.7e-41 172.6 133 65.4
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 6.1e-41 171.4 173 53.2
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 2.0e-39 166.4 149 54.4
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.3e-39 165.6 145 60.7
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 4.8e-38 161.8 134 62.7
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 4.8e-38 161.8 149 51.0
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 6.3e-38 161.4 132 62.9
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.3e-35 153.7 107 68.2
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 2.9e-35 152.5 128 60.2
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.1e-31 140.6 104 65.4
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.6e-31 139.4 88 72.7
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.7e-31 138.3 86 75.6
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 9.7e-31 137.5 111 63.1
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.5e-28 128.6 78 76.9
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 5.9e-28 128.3 127 57.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.1e-26 124.0 116 57.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 9.4e-26 120.9 85 69.4
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 8.0e-25 117.9 135 41.5
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.4e-21 106.3 66 74.2
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 7.0e-21 104.8 88 59.1
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 4.5e-20 102.1 120 40.8
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 1.5e-18 97.1 53 84.9
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.5e-18 97.1 54 87.0
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 3.6e-17 92.4 52 80.8
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 9.8e-15 84.3 60 66.7
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.7e-14 82.4 84 54.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-13 80.9 70 57.1
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-13 80.9 70 57.1
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.1e-13 77.8 49 75.5
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 9.4e-10 67.8 82 39.0


User provided reference genes

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