Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1409.8 751 100.0
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1314.7 805 89.7
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 0.0e+00 1258.0 805 85.5
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1243.0 805 84.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1240.7 805 84.2
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 0.0e+00 1239.2 805 84.2
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 0.0e+00 1235.3 803 83.9
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 0.0e+00 1233.8 805 83.7
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 0.0e+00 1231.9 805 83.5
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 0.0e+00 1230.3 821 82.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 0.0e+00 1214.5 848 80.2
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 0.0e+00 1193.3 801 80.9
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 0.0e+00 1110.9 802 76.1
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 4.6e-271 937.9 819 62.6
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 1.4e-270 936.4 819 63.0
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 1.4e-267 926.4 816 62.0
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 2.0e-266 922.5 819 61.9
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 7.7e-266 920.6 821 61.8
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.8e-265 918.3 821 61.6
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 5.0e-265 917.9 821 61.4
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.4e-264 916.4 817 62.8
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 9.4e-264 913.7 818 61.4
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 2.1e-263 912.5 824 61.3
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 4.7e-263 911.4 820 61.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.4e-262 909.8 817 61.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 6.3e-260 901.0 856 59.8
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 3.1e-259 898.7 819 60.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 5.3e-259 897.9 816 62.1
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 4.5e-258 894.8 819 60.0
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.5e-257 890.6 819 60.0
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.2e-256 888.3 819 59.8
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 4.7e-255 884.8 819 60.7
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.8e-254 882.9 821 60.2
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.7e-252 875.2 820 60.2
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 6.3e-252 874.4 820 59.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.1e-251 872.1 808 61.0
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 7.0e-251 870.9 826 58.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 4.5e-250 868.2 819 59.3
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 5.9e-250 867.8 820 59.1
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.0e-249 867.1 821 59.2
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.7e-249 866.3 785 61.0
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 6.5e-249 864.4 819 59.5
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.1e-248 863.6 821 59.0
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.9e-248 862.8 817 58.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.2e-247 860.1 822 58.3
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 3.0e-246 855.5 843 57.2
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 4.0e-246 855.1 815 59.0
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.2e-246 854.7 805 59.5
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.7e-244 849.7 819 57.8
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 2.2e-244 849.4 822 58.9
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 3.7e-244 848.6 819 58.7
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 6.3e-244 847.8 822 58.4
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.8e-243 846.3 813 57.2
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.8e-243 846.3 788 59.6
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.8e-243 846.3 881 56.5
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 3.5e-242 842.0 813 57.1
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 3.8e-241 838.6 813 56.9
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.2e-239 833.6 824 57.3
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.6e-239 833.2 821 56.9
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.6e-239 833.2 820 57.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.1e-239 832.8 818 57.2
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.0e-238 830.5 819 57.6
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.8e-238 829.7 819 57.3
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 5.2e-238 828.2 819 56.7
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.2e-237 827.0 744 61.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 8.3e-236 820.8 825 57.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.8e-235 819.7 821 56.4
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 3.1e-235 818.9 814 57.7
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 5.4e-235 818.1 846 54.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 7.0e-235 817.8 820 57.0
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 2.0e-234 816.2 828 56.8
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.7e-234 815.8 819 56.3
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.7e-234 815.8 822 55.8
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 2.9e-233 812.4 806 56.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.8e-230 803.1 807 57.0
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.5e-229 800.0 842 55.1
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 2.0e-229 799.7 817 55.7
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.9e-228 795.0 816 54.9
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.1e-227 792.0 816 55.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.0e-226 789.6 767 59.1
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 9.5e-224 780.8 754 58.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.0e-223 777.7 743 57.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 4.4e-221 771.9 817 54.5
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 9.8e-221 770.8 809 54.4
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.7e-220 770.0 857 53.1
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.7e-220 768.8 817 54.5
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.1e-219 767.3 833 54.6
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 3.2e-219 765.8 482 86.7
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 4.6e-218 761.9 925 50.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.8e-215 752.7 815 53.9
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 8.6e-209 731.1 816 51.3
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.2e-207 727.2 821 50.9
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 5.6e-200 701.8 793 51.6
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-185 653.7 687 56.2
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.4e-181 639.4 862 45.6
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 3.3e-168 596.3 662 53.6
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.8e-158 563.9 591 54.1
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.7e-143 513.1 771 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 5.0e-140 502.7 750 42.0
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.2e-138 498.0 828 40.6
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-133 479.9 607 48.8
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.1e-130 469.2 316 81.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.5e-125 453.0 494 51.8
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 5.9e-125 452.6 779 38.9
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.7e-122 443.7 464 62.3
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 6.1e-122 442.6 405 59.0
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 7.7e-117 425.6 820 37.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 3.8e-116 423.3 815 36.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.3e-107 392.5 379 55.7
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.9e-102 377.9 267 73.0
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.4e-89 335.1 255 67.8
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.8e-73 281.6 241 63.9
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-64 252.3 269 52.8
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.1e-62 245.7 218 55.5
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.3e-50 205.7 119 89.9
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.5e-47 193.0 354 38.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 5.9e-40 170.2 795 24.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.0e-39 169.5 222 43.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.2e-37 162.5 122 68.9
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.0e-31 142.9 820 22.8
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.7e-29 134.8 101 68.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.4e-27 126.7 241 37.3
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.2e-22 110.2 69 82.6
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 9.4e-22 109.8 235 38.7
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 6.7e-20 103.6 93 58.1
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 8.8e-20 103.2 141 42.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 3.7e-18 97.8 118 46.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.1e-17 94.4 117 46.2
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-17 93.6 86 50.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.5e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.3e-12 78.6 166 38.0
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-12 77.4 74 48.6
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 2.6e-11 75.1 68 57.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 9.1e-09 66.6 47 72.3
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 1.0e-07 63.2 67 46.3


User provided reference genes

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