Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 1.8e-31 138.7 71 100.0
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 1.4e-23 112.5 72 87.5
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 6.0e-19 97.1 71 77.5
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 1.0e-18 96.3 72 79.2
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 1.3e-18 95.9 71 76.1
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 3.0e-18 94.7 72 77.8
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 3.0e-18 94.7 72 77.8
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 8.6e-18 93.2 67 73.1
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 1.9e-17 92.0 72 73.6
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 1.9e-17 92.0 70 75.7
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 5.6e-17 90.5 71 73.2
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 5.6e-17 90.5 71 74.6
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 2.8e-16 88.2 63 76.2
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 2.8e-16 88.2 71 74.6
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 3.6e-16 87.8 71 74.6
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 8.1e-16 86.7 63 74.6
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 8.1e-16 86.7 63 74.6
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 5.2e-15 84.0 62 75.8
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 9.9e-14 79.7 67 64.2
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 9.9e-14 79.7 67 64.2
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 9.9e-14 79.7 55 70.9
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 2.2e-13 78.6 70 60.0
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 2.2e-13 78.6 64 64.1
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 4.9e-13 77.4 63 63.5
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 6.4e-13 77.0 67 61.2
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 1.4e-12 75.9 60 70.0
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 2.4e-12 75.1 62 66.1
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 3.2e-12 74.7 39 89.7
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 3.2e-12 74.7 42 85.7
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 3.2e-12 74.7 54 66.7
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 3.2e-12 74.7 43 79.1
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 4.1e-12 74.3 61 63.9
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 4.1e-12 74.3 60 65.0
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 4.1e-12 74.3 42 85.7
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 4.1e-12 74.3 51 70.6
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 5.4e-12 73.9 53 67.9
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 7.1e-12 73.6 63 65.1
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 7.1e-12 73.6 74 54.1
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 7.1e-12 73.6 63 63.5
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 9.2e-12 73.2 44 81.8
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 9.2e-12 73.2 44 81.8
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 9.2e-12 73.2 61 62.3
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 9.2e-12 73.2 48 72.9
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 9.2e-12 73.2 48 72.9
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 2.1e-11 72.0 63 58.7
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 2.1e-11 72.0 41 80.5
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 2.1e-11 72.0 49 69.4
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 2.7e-11 71.6 61 59.0
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 2.7e-11 71.6 51 68.6
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 2.7e-11 71.6 62 64.5
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 3.5e-11 71.2 44 79.5
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 4.6e-11 70.9 40 82.5
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 4.6e-11 70.9 39 87.2
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 4.6e-11 70.9 49 69.4
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 6.0e-11 70.5 67 56.7
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 6.0e-11 70.5 39 84.6
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 6.0e-11 70.5 49 71.4
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 7.8e-11 70.1 41 85.4
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 1.0e-10 69.7 47 78.7
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 1.3e-10 69.3 63 63.5
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 1.7e-10 68.9 60 61.7
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.3e-10 68.6 55 61.8
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 2.3e-10 68.6 60 61.7
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 3.9e-10 67.8 41 80.5
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 5.1e-10 67.4 54 63.0
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 5.1e-10 67.4 38 78.9
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 5.1e-10 67.4 62 61.3
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 6.6e-10 67.0 46 73.9
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 8.6e-10 66.6 56 60.7
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.1e-09 66.2 37 81.1
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.1e-09 66.2 49 71.4
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.1e-09 66.2 49 71.4
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 1.1e-09 66.2 40 82.5
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 1.1e-09 66.2 54 61.1
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.5e-09 65.9 56 64.3
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.5e-09 65.9 52 63.5
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.5e-09 65.9 56 64.3
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.5e-09 65.9 56 64.3
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 1.9e-09 65.5 41 78.0
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 2.5e-09 65.1 62 62.9
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 3.3e-09 64.7 38 81.6
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 4.3e-09 64.3 44 65.9
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 4.3e-09 64.3 68 52.9
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 5.6e-09 63.9 56 58.9
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 5.6e-09 63.9 41 75.6
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 7.3e-09 63.5 49 69.4
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 7.3e-09 63.5 37 83.8
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 1.2e-08 62.8 42 73.8
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 1.2e-08 62.8 42 73.8
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 2.1e-08 62.0 52 63.5
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 2.1e-08 62.0 40 70.0
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 2.8e-08 61.6 49 59.2
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 6.2e-08 60.5 65 52.3
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 1.4e-07 59.3 47 61.7


User provided reference genes

Program Settings