Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 3.0e-125 451.8 226 100.0
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 6.8e-109 397.5 233 84.1
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.1e-103 380.2 228 82.0
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.8e-102 375.6 223 83.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.5e-100 369.8 222 81.5
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 2.0e-100 369.4 225 78.2
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 9.8e-100 367.1 226 81.9
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.9e-99 365.5 226 81.4
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 3.7e-99 365.2 228 80.3
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.1e-98 363.6 226 80.5
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.1e-98 363.6 224 80.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.4e-98 363.2 228 76.8
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.1e-97 359.4 243 72.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.5e-97 358.6 228 79.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 5.8e-92 341.3 242 71.1
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 6.2e-86 321.2 236 68.2
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.1e-85 320.5 241 67.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 2.0e-84 316.2 244 65.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.6e-84 314.3 251 63.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.3e-83 313.5 246 64.2
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.9e-83 312.4 235 66.4
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.8e-83 312.0 235 66.0
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 6.4e-83 311.2 251 61.4
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.4e-83 310.8 235 66.0
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 8.4e-83 310.8 232 67.7
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.9e-82 309.7 236 64.4
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.4e-82 309.3 234 66.2
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.2e-82 308.9 226 66.4
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 4.2e-82 308.5 236 64.4
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.1e-82 307.8 255 62.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 9.3e-82 307.4 236 64.8
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.6e-81 306.6 257 60.7
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.6e-81 306.6 235 62.1
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.1e-81 306.2 241 65.1
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 2.7e-81 305.8 253 62.8
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.5e-81 305.4 232 64.2
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.5e-81 305.4 250 63.6
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.5e-81 305.4 237 62.4
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 6.0e-81 304.7 185 77.8
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.0e-81 304.7 234 62.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 6.0e-81 304.7 234 62.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 6.0e-81 304.7 254 59.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 6.0e-81 304.7 238 63.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.0e-80 303.9 247 61.9
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.3e-80 303.5 246 62.2
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.3e-80 303.5 233 65.7
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.7e-80 303.1 236 63.6
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.0e-80 302.4 247 62.8
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.0e-80 302.4 248 62.5
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 3.9e-80 302.0 231 62.8
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 3.9e-80 302.0 196 72.4
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.1e-80 301.6 250 60.0
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 6.6e-80 301.2 241 63.5
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 8.7e-80 300.8 236 63.6
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.5e-79 300.1 250 62.8
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.9e-79 299.7 250 60.0
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.9e-79 299.7 243 63.4
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.5e-79 299.3 229 64.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 4.3e-79 298.5 200 69.5
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.3e-79 298.5 249 59.4
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 7.3e-79 297.7 238 61.8
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.3e-78 297.0 200 72.5
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.3e-78 297.0 251 61.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.3e-78 297.0 249 60.2
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.3e-78 297.0 234 62.8
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.6e-78 296.6 234 62.8
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 2.1e-78 296.2 180 77.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.8e-78 295.8 226 65.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.6e-78 295.4 193 71.5
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 3.6e-78 295.4 244 62.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.8e-78 295.0 247 59.1
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.8e-78 295.0 245 61.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 4.8e-78 295.0 234 62.4
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 6.2e-78 294.7 194 73.2
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-77 293.9 247 58.7
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.4e-77 293.5 249 61.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.8e-77 293.1 238 61.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 2.4e-77 292.7 247 61.9
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 6.9e-77 291.2 250 58.4
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.0e-77 290.8 184 72.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.6e-76 289.3 187 72.7
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 9.9e-76 287.3 243 61.3
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.2e-75 286.2 249 57.0
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.2e-75 286.2 246 57.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.9e-75 285.8 209 67.5
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.9e-75 285.0 250 58.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 4.9e-75 285.0 246 60.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 4.2e-74 282.0 233 63.1
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.2e-73 280.4 203 66.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.7e-73 279.3 187 69.5
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 6.0e-73 278.1 245 59.6
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 5.1e-72 275.0 167 77.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 6.6e-72 274.6 185 70.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.5e-71 273.5 185 68.6
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 7.3e-71 271.2 172 72.7
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.6e-70 270.0 193 66.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-69 266.9 205 64.9
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 6.4e-67 258.1 344 44.8
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.5e-66 255.0 176 67.0
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 9.3e-66 254.2 233 53.6
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 9.3e-66 254.2 180 66.1
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-65 253.8 185 68.1
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.7e-65 252.7 144 81.2
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 6.7e-64 248.1 187 65.8
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.5e-63 246.9 187 65.2
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 5.6e-63 245.0 205 60.5
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.7e-62 242.3 245 53.1
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 3.7e-62 242.3 230 54.8
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 6.9e-61 238.0 171 64.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 2.9e-59 232.6 243 51.9
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.4e-58 230.3 251 53.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.2e-57 227.3 167 63.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 3.5e-57 225.7 157 65.6
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.3e-56 223.0 188 58.0
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 3.0e-56 222.6 146 71.2
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.1e-56 221.9 162 63.6
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.5e-50 203.0 171 61.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.0e-48 197.6 224 45.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.1e-47 194.1 185 55.1
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.9e-47 193.4 153 64.1
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 4.3e-47 192.2 188 54.3
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.8e-46 188.7 182 56.0
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 6.3e-46 188.3 182 51.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.8e-45 186.8 177 55.9
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 7.2e-42 174.9 132 68.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-39 167.2 112 72.3
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.3e-39 165.6 148 58.8
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.1e-37 159.5 119 71.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-36 156.8 118 69.5
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.3e-35 154.1 150 54.7
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.1e-34 151.0 136 63.2
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.1e-34 151.0 136 63.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.9e-34 150.2 86 77.9
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 7.2e-34 148.3 102 66.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.2e-33 147.5 166 51.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.6e-33 147.1 146 54.1
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 6.1e-33 145.2 168 48.2
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 7.9e-33 144.8 101 70.3
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.8e-32 143.7 95 71.6
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.3e-31 139.4 178 43.8
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 7.7e-28 128.3 131 50.4
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 8.0e-25 118.2 186 37.6
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.8e-22 109.8 68 72.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.4e-21 106.7 72 68.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.0e-20 103.6 65 75.4
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-17 94.0 70 65.7
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 3.4e-15 86.3 62 66.1
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.3e-14 81.6 84 59.5
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 9.1e-13 78.2 119 44.5
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.7e-12 76.6 84 53.6
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-10 71.2 52 65.4
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.1e-10 71.2 105 44.8


User provided reference genes

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