Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002004m.g Eutrema salsugineum HOM05D006216 ORTHO05D007760 4.4e-220 767.7 398 100.0
Sp4g08430 Schrenkiella parvula HOM05D006216 ORTHO05D007760 7.5e-204 713.8 398 91.2
BolC4t23960H Brassica oleracea HOM05D006216 ORTHO05D007760 1.9e-199 699.1 398 88.9
A07p17910 Brassica napus HOM05D006216 ORTHO05D007760 2.5e-199 698.7 398 89.2
BraA07t29509Z Brassica rapa HOM05D006216 ORTHO05D007760 2.5e-199 698.7 398 89.2
BcaC02g10847 Brassica carinata HOM05D006216 ORTHO05D007760 9.5e-199 696.8 398 88.9
C04p24560 Brassica napus HOM05D006216 ORTHO05D007760 9.5e-199 696.8 398 88.9
BcaB02g10053 Brassica carinata HOM05D006216 ORTHO05D007760 6.8e-197 690.6 401 88.3
AT2G26930 Arabidopsis thaliana HOM05D006216 ORTHO05D007760 1.3e-195 686.4 392 88.5
Carub.0004s0743 Capsella rubella HOM05D006216 ORTHO05D007760 2.2e-195 685.6 392 88.5
AL4G20170 Arabidopsis lyrata HOM05D006216 ORTHO05D007760 1.2e-193 679.9 392 88.0
CARHR119100 Cardamine hirsuta HOM05D006216 ORTHO05D007760 2.1e-190 669.1 392 88.5
Aa31LG5G8850 Aethionema arabicum HOM05D006216 ORTHO05D007760 2.0e-180 636.0 441 74.4
THA.LOC104816956 Tarenaya hassleriana HOM05D006216 ORTHO05D007760 1.7e-179 632.9 391 80.1
Manes.01G176400 Manihot esculenta HOM05D006216 ORTHO05D007760 2.6e-164 582.4 336 82.7
Manes.02G134400 Manihot esculenta HOM05D006216 ORTHO05D007760 1.3e-163 580.1 350 80.9
Gohir.A07G119000 Gossypium hirsutum HOM05D006216 ORTHO05D007760 2.9e-163 578.9 330 82.4
QL01p020730 Quercus lobata HOM05D006216 ORTHO05D007760 4.9e-163 578.2 348 78.4
Gohir.D07G123300 Gossypium hirsutum HOM05D006216 ORTHO05D007760 6.5e-163 577.8 330 82.1
PGR119G0354 Punica granatum HOM05D006216 ORTHO05D007760 2.5e-162 575.9 351 77.5
Thecc.09G251000 Theobroma cacao HOM05D006216 ORTHO05D007760 4.2e-162 575.1 331 81.6
CiPaw.13G146100 Carya illinoinensis HOM05D006216 ORTHO05D007760 2.7e-161 572.4 339 78.8
Ciclev10015579m.g Citrus clementina HOM05D006216 ORTHO05D007760 2.7e-161 572.4 331 82.5
Gorai.001G133000 Gossypium raimondii HOM05D006216 ORTHO05D007760 2.7e-161 572.4 333 81.4
RcHm_v2.0_Chr5g0050131 Rosa chinensis HOM05D006216 ORTHO05D007760 3.5e-161 572.0 343 79.3
MELO3C015605.2 Cucumis melo HOM05D006216 ORTHO05D007760 6.1e-161 571.2 388 72.4
TWI31G0496 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 1.1e-159 567.0 335 79.7
AUR62024257 Chenopodium quinoa HOM05D006216 ORTHO05D007760 5.7e-159 564.7 346 77.2
Eucgr.J00662 Eucalyptus grandis HOM05D006216 ORTHO05D007760 7.4e-159 564.3 331 78.9
MD03G1163100 Malus domestica HOM05D006216 ORTHO05D007760 9.7e-159 563.9 385 73.0
Hma1.2p1_1843F.1_g305010 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 1.6e-158 563.1 342 77.8
Actinidia07007 Actinidia chinensis HOM05D006216 ORTHO05D007760 2.2e-158 562.8 352 76.4
CANSAT54G1188 Cannabis sativa HOM05D006216 ORTHO05D007760 2.2e-158 562.8 362 75.4
TWI75G0612 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 2.8e-158 562.4 382 72.8
VMungo1215G0750 Vigna mungo HOM05D006216 ORTHO05D007760 2.8e-158 562.4 346 77.5
Cfa010159 Carpinus fangiana HOM05D006216 ORTHO05D007760 3.7e-158 562.0 376 71.5
Lj6g0023824 Lotus japonicus HOM05D006216 ORTHO05D007760 3.7e-158 562.0 343 77.3
arahy.Tifrunner.gnm1.ann1.CPM77E Arachis hypogaea HOM05D006216 ORTHO05D007760 4.8e-158 561.6 334 79.3
arahy.Tifrunner.gnm1.ann1.G3L2E7 Arachis hypogaea HOM05D006216 ORTHO05D007760 4.8e-158 561.6 347 76.9
Medtr3g437340 Medicago truncatula HOM05D006216 ORTHO05D007760 4.8e-158 561.6 338 78.4
Nitab4.5_0002300g0020 Nicotiana tabacum HOM05D006216 ORTHO05D007760 4.8e-158 561.6 331 78.9
Dinv29341 Davidia involucrata HOM05D006216 ORTHO05D007760 6.3e-158 561.2 349 76.8
Sc04g0009550 Simmondsia chinensis HOM05D006216 ORTHO05D007760 1.1e-157 560.5 333 78.4
Haze_23545 Corylus avellana HOM05D006216 ORTHO05D007760 1.4e-157 560.1 375 72.0
Duzib168G1114 Durio zibethinus HOM05D006216 ORTHO05D007760 1.4e-157 560.1 339 79.9
Sed0006982 Sechium edule HOM05D006216 ORTHO05D007760 1.8e-157 559.7 393 71.0
CsaV3_1G041900 Cucumis sativus L. HOM05D006216 ORTHO05D007760 2.4e-157 559.3 388 71.1
Lsat_1_v5_gn_2_36221 Lactuca sativa HOM05D006216 ORTHO05D007760 3.1e-157 558.9 359 75.5
Lalb_Chr18g0048331 Lupinus albus HOM05D006216 ORTHO05D007760 3.1e-157 558.9 350 75.7
Solyc01g009010.3 Solanum lycopersicum HOM05D006216 ORTHO05D007760 4.1e-157 558.5 331 78.5
TAR633G2593 Trochodendron aralioides HOM05D006216 ORTHO05D007760 5.3e-157 558.1 339 78.2
Ca_13675_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 9.0e-157 557.4 361 74.8
FAN21G1147 Fragaria x ananassa HOM05D006216 ORTHO05D007760 9.0e-157 557.4 345 77.1
Phvul.006G019500 Phaseolus vulgaris HOM05D006216 ORTHO05D007760 9.0e-157 557.4 351 75.5
Glyma.20G046800 Glycine max HOM05D006216 ORTHO05D007760 1.2e-156 557.0 347 76.7
Lj2A825T28 Lonicera japonica HOM05D006216 ORTHO05D007760 1.2e-156 557.0 341 78.0
Sopen01g004500 Solanum pennellii HOM05D006216 ORTHO05D007760 1.5e-156 556.6 346 75.4
AUR62005484 Chenopodium quinoa HOM05D006216 ORTHO05D007760 2.0e-156 556.2 330 79.7
FvH4_3g27650 Fragaria vesca HOM05D006216 ORTHO05D007760 2.0e-156 556.2 345 76.8
FAN11G0826 Fragaria x ananassa HOM05D006216 ORTHO05D007760 2.0e-156 556.2 345 76.8
Glyma.13G072700 Glycine max HOM05D006216 ORTHO05D007760 2.6e-156 555.8 349 75.4
PGSC0003DMG400022703 Solanum tuberosum HOM05D006216 ORTHO05D007760 2.6e-156 555.8 346 75.7
TPR.G11861 Trifolium pratense HOM05D006216 ORTHO05D007760 3.4e-156 555.4 348 75.6
GSVIVG01037382001 Vitis vinifera HOM05D006216 ORTHO05D007760 3.4e-156 555.4 348 75.9
CSS0031944 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 4.5e-156 555.1 347 75.8
FAN25G0225 Fragaria x ananassa HOM05D006216 ORTHO05D007760 4.5e-156 555.1 334 78.7
MSTRG.12426 Avicennia marina HOM05D006216 ORTHO05D007760 5.9e-156 554.7 339 76.1
CAN.G714.2 Capsicum annuum HOM05D006216 ORTHO05D007760 5.9e-156 554.7 346 75.4
vmacro04357 Vaccinium macrocarpon HOM05D006216 ORTHO05D007760 5.9e-156 554.7 348 76.1
CSS0004136 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 1.0e-155 553.9 358 74.0
Migut.D00703 Erythranthe guttata HOM05D006216 ORTHO05D007760 2.2e-155 552.7 350 75.1
Hund25392 Selenicereus undatus HOM05D006216 ORTHO05D007760 6.5e-155 551.2 334 77.5
Psat5g182280 Pisum sativum HOM05D006216 ORTHO05D007760 8.5e-155 550.8 339 77.0
HanXRQChr14g0433421 Helianthus annuus HOM05D006216 ORTHO05D007760 1.1e-154 550.4 344 75.9
Peaxi162Scf00050g02022 Petunia axillaris HOM05D006216 ORTHO05D007760 1.9e-154 549.7 338 77.5
ECA238G2733 Erigeron canadensis HOM05D006216 ORTHO05D007760 2.5e-154 549.3 386 70.5
PSO339G5720 Papaver somniferum HOM05D006216 ORTHO05D007760 2.5e-154 549.3 359 73.3
Potri.001G225100 Populus trichocarpa HOM05D006216 ORTHO05D007760 3.2e-154 548.9 374 72.2
Potri.009G021800 Populus trichocarpa HOM05D006216 ORTHO05D007760 1.2e-153 547.0 335 77.3
Zm00001eb150630 Zea mays HOM05D006216 ORTHO05D007760 1.6e-153 546.6 343 75.8
Cc01_g07140 Coffea canephora HOM05D006216 ORTHO05D007760 2.1e-153 546.2 339 75.8
PSO384G3582 Papaver somniferum HOM05D006216 ORTHO05D007760 2.1e-153 546.2 349 73.9
SalBow6G4438 Salvia bowleyana HOM05D006216 ORTHO05D007760 4.6e-153 545.0 343 74.9
Lalb_Chr15g0080191 Lupinus albus HOM05D006216 ORTHO05D007760 1.0e-152 543.9 325 78.8
Nn7g37015 Nelumbo nucifera HOM05D006216 ORTHO05D007760 3.9e-152 542.0 325 78.5
Sabra16G0133700 Salix brachista HOM05D006216 ORTHO05D007760 2.2e-150 536.2 391 68.0
Os01g0802100 Oryza sativa ssp. japonica HOM05D006216 ORTHO05D007760 4.8e-150 535.0 338 75.1
Aqoxy1G00047 Aquilegia oxysepala HOM05D006216 ORTHO05D007760 8.2e-150 534.3 338 74.3
ClCG03G014320 Citrullus lanatus HOM05D006216 ORTHO05D007760 1.1e-149 533.9 388 68.8
Rhsim13G0202500 Rhododendron simsii HOM05D006216 ORTHO05D007760 3.4e-148 528.9 337 76.0
ATR0782G058 Amborella trichopoda HOM05D006216 ORTHO05D007760 5.0e-147 525.0 335 72.8
CDE08G0663 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 1.1e-146 523.9 324 76.9
MSTRG.21323 Avicennia marina HOM05D006216 ORTHO05D007760 5.5e-146 521.5 327 75.2
SGA_v2.0_scaffold79G25547 Striga asiatica HOM05D006216 ORTHO05D007760 2.1e-145 519.6 385 68.1
CDE09G0516 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 4.4e-143 511.9 350 72.3
EL10Ac6g13846 Beta vulgaris HOM05D006216 ORTHO05D007760 5.7e-143 511.5 354 70.6
Atru.BG.104.p Acer truncatum HOM05D006216 ORTHO05D007760 2.8e-142 509.2 299 81.3
DCAR_006327 Daucus carota HOM05D006216 ORTHO05D007760 5.0e-139 498.4 357 69.7
Migut.N02401 Erythranthe guttata HOM05D006216 ORTHO05D007760 1.1e-138 497.3 305 77.4
Nitab4.5_0000428g0050 Nicotiana tabacum HOM05D006216 ORTHO05D007760 5.7e-135 485.0 321 73.2
HPP92_001661 Vanilla planifolia HOM05D006216 ORTHO05D007760 2.8e-134 482.6 364 65.9
Atru.chr3.2830 Acer truncatum HOM05D006216 ORTHO05D007760 6.3e-134 481.5 281 81.1
unitig_27.g25131 Utricularia gibba HOM05D006216 ORTHO05D007760 4.5e-132 475.3 349 67.9
Mapoly0033s0031 Marchantia polymorpha HOM05D006216 ORTHO05D007760 1.6e-129 466.8 332 66.9
Pp3c26_490 Physcomitrium patens HOM05D006216 ORTHO05D007760 4.7e-129 465.3 324 65.1
SMO367G1046 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 4.0e-128 462.2 341 64.5
CBR_g22270 Chara braunii HOM05D006216 ORTHO05D007760 1.0e-120 437.6 336 62.8
Hma1.2p1_1843F.1_g305000 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 1.5e-119 433.7 256 79.7
MBI19_g37419_MAGBIO Magnolia biondii HOM05D006216 ORTHO05D007760 3.7e-110 402.5 327 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3849 Anthoceros agrestis HOM05D006216 ORTHO05D007760 1.8e-109 400.2 285 66.3
Prupe.4G269400 Prunus persica HOM05D006216 ORTHO05D007760 1.6e-105 387.1 218 84.9
MCO08G209 Micromonas commoda HOM05D006216 ORTHO05D007760 1.8e-88 330.5 296 55.7
Cre02.g145050 Chlamydomonas reinhardtii HOM05D006216 ORTHO05D007760 3.5e-84 316.2 292 53.8
Sabra09G0013700 Salix brachista HOM05D006216 ORTHO05D007760 6.8e-80 302.0 291 56.4
PRCOL_00004294 Prasinoderma coloniale HOM05D006216 ORTHO05D007760 1.3e-78 297.7 303 49.5
SEGI_15556 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 9.6e-74 281.6 182 74.7
Glyma.17G179800 Glycine max HOM05D006216 ORTHO05D007760 1.1e-64 251.5 181 71.3
Hund17544 Selenicereus undatus HOM05D006216 ORTHO05D007760 2.5e-53 213.8 174 59.8
SEGI_04634 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 2.4e-48 197.2 130 65.4
FAN26G0546 Fragaria x ananassa HOM05D006216 ORTHO05D010609 3.3e-42 176.8 113 77.0
SMO332G0003 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 6.3e-33 146.0 102 68.6
SMO332G0042 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 8.2e-25 119.0 115 51.3
Oeu063625.1 Olea europaea HOM05D006216 ORTHO05D007760 2.5e-21 107.5 65 72.3
SMO198G0007 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 4.7e-20 103.2 106 51.9
Ca_29165_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 6.1e-20 102.8 157 38.9
Hund00952 Selenicereus undatus HOM05D006216 ORTHO05D007760 2.6e-18 97.4 106 50.0
DCAR_006325 Daucus carota HOM05D006216 ORTHO05D007760 7.7e-15 85.9 55 67.3


User provided reference genes

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