Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 8.7e-122 440.3 216 100.0
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 2.0e-49 199.9 229 54.1
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 7.8e-46 188.0 236 50.8
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 7.8e-46 188.0 236 50.8
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.7e-45 186.8 236 50.8
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 3.0e-45 186.0 235 50.2
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 3.0e-45 186.0 235 50.2
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 3.0e-45 186.0 220 50.9
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 4.6e-38 162.2 217 49.3
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.0e-37 161.0 197 49.7
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.8e-35 152.1 178 54.5
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 2.0e-33 146.7 164 56.1
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.3e-32 144.1 229 43.7
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.7e-32 143.7 257 38.1
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.7e-32 143.7 231 40.7
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 7.1e-31 138.3 169 49.1
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 2.9e-24 116.3 175 41.7
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 2.9e-24 116.3 175 41.7
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 4.9e-24 115.5 175 41.7
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 8.4e-24 114.8 170 42.9
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 1.4e-23 114.0 170 42.9
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.4e-23 113.2 175 42.3
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 2.4e-23 113.2 166 42.8
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.4e-23 113.2 214 38.8
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 3.2e-23 112.8 170 42.4
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.6e-22 110.5 164 43.3
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 1.0e-21 107.8 148 44.6
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 6.7e-21 105.1 148 43.9
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 2.5e-20 103.2 157 43.3
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.3e-19 100.9 150 46.0
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 1.6e-19 100.5 129 45.0
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 8.1e-19 98.2 183 38.3
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 8.1e-19 98.2 183 38.3
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 5.3e-18 95.5 145 42.1
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 9.0e-18 94.7 157 42.0
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 3.4e-17 92.8 175 37.1
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 4.5e-17 92.4 176 36.9
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 4.5e-17 92.4 145 43.4
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 2.2e-16 90.1 142 40.1
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.2e-16 90.1 180 36.7
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 3.8e-16 89.4 154 41.6
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 3.8e-16 89.4 182 37.9
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 4.9e-16 89.0 182 37.4
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 6.5e-16 88.6 165 38.8
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.1e-15 87.8 173 36.4
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 1.9e-15 87.0 199 35.7
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.9e-15 87.0 182 37.9
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 3.2e-15 86.3 199 35.2
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 5.5e-15 85.5 178 36.5
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 7.1e-15 85.1 171 38.6
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 1.6e-14 84.0 102 45.1
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 1.6e-14 84.0 131 42.0
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 2.7e-14 83.2 131 42.0
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 4.6e-14 82.4 105 43.8
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 4.6e-14 82.4 105 43.8
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 6.0e-14 82.0 143 41.3
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 5.1e-13 79.0 187 34.8
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 8.7e-13 78.2 156 36.5
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.1e-12 77.8 159 34.0
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 1.5e-12 77.4 158 38.6
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 1.5e-12 77.4 174 35.6
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 1.5e-12 77.4 161 31.7
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 1.9e-12 77.0 194 34.5
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.5e-12 76.6 147 38.1
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 2.5e-12 76.6 181 31.5
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.3e-12 76.3 147 38.1
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 4.3e-12 75.9 157 35.7
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 5.7e-12 75.5 154 33.8
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 5.7e-12 75.5 180 33.3
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 5.7e-12 75.5 158 34.8
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 1.6e-11 73.9 174 31.6
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-11 73.9 163 31.3
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 2.1e-11 73.6 170 34.1
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.7e-11 72.8 162 33.3
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 4.8e-11 72.4 170 32.9
A10p04470 Brassica napus HOM05D000862 ORTHO05D003588 4.8e-11 72.4 167 32.3
C05p04090 Brassica napus HOM05D000862 ORTHO05D003588 4.8e-11 72.4 167 32.3
BolC5t29188H Brassica oleracea HOM05D000862 ORTHO05D003588 4.8e-11 72.4 167 32.3
BraA10t42714Z Brassica rapa HOM05D000862 ORTHO05D003588 4.8e-11 72.4 167 32.3
DCAR_003013 Daucus carota HOM05D000862 ORTHO05D003588 8.2e-11 71.6 161 36.6
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 8.2e-11 71.6 159 34.0
Nitab4.5_0000941g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.2e-11 71.6 150 33.3
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 8.2e-11 71.6 175 32.6
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 1.1e-10 71.2 170 32.4
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 1.4e-10 70.9 146 32.9
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 1.4e-10 70.9 176 33.5
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 1.4e-10 70.9 166 35.5
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.4e-10 70.9 145 37.2
BcaC05g24339 Brassica carinata HOM05D000862 ORTHO05D003588 1.8e-10 70.5 167 33.5
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 1.8e-10 70.5 165 35.2
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 4.1e-10 69.3 161 34.8
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 5.3e-10 68.9 89 48.3
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 5.3e-10 68.9 89 48.3
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 5.3e-10 68.9 165 33.9
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 5.3e-10 68.9 158 36.1
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 1.2e-09 67.8 156 32.1
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 1.2e-09 67.8 144 36.8
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.5e-09 67.4 146 33.6
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 2.0e-09 67.0 177 32.2
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 2.0e-09 67.0 109 41.3
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 3.4e-09 66.2 149 32.2
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 3.4e-09 66.2 169 30.2
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.5e-09 65.9 162 31.5
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 5.9e-09 65.5 176 34.1
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.9e-09 65.5 163 32.5
Ah.06g187570 Amaranthus hybridus HOM05D000056 ORTHO05D000019 1.0e-08 64.7 172 32.0
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 1.0e-08 64.7 132 37.9
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 1.0e-08 64.7 132 37.9
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.0e-08 64.7 162 32.1
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.0e-08 64.7 149 36.2
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 1.3e-08 64.3 136 31.6
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.9e-08 63.2 97 40.2
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 2.9e-08 63.2 127 37.8
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.9e-08 63.2 161 29.2
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.8e-08 62.8 167 31.7
Thhalv10023105m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 6.5e-08 62.0 64 51.6
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 6.5e-08 62.0 162 30.2
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 6.5e-08 62.0 156 30.8
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 6.5e-08 62.0 164 34.1
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-07 60.8 114 32.5
Aa31LG1G8610 Aethionema arabicum HOM05D000862 ORTHO05D003588 1.9e-07 60.5 177 30.5
BolC5t29186H Brassica oleracea HOM05D000862 ORTHO05D003588 1.9e-07 60.5 140 34.3
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.5e-07 60.1 114 32.5
FAN27G0829 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.5e-07 60.1 161 31.1
CARHR005280 Cardamine hirsuta HOM05D000862 ORTHO05D003588 3.2e-07 59.7 171 29.2
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 4.2e-07 59.3 159 34.6
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 5.5e-07 58.9 136 38.2
Eucgr.I00640 Eucalyptus grandis HOM05D000862 ORTHO05D000943 5.5e-07 58.9 120 33.3
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.5e-07 58.9 160 30.0
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.2e-07 58.5 162 34.0
TAR636G3530 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.2e-07 58.5 143 34.3
PGSC0003DMG400032197 Solanum tuberosum HOM05D000862 ORTHO05D003588 9.3e-07 58.2 189 29.1
THA.LOC104801543 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 1.2e-06 57.8 144 34.7
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 1.2e-06 57.8 161 30.4
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 1.6e-06 57.4 138 31.2
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 1.6e-06 57.4 153 30.1
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.6e-06 57.4 143 32.9
FAN06G3691 Fragaria x ananassa HOM05D000862 ORTHO05D000943 2.7e-06 56.6 109 34.9
THA.LOC104806014 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 2.7e-06 56.6 89 32.6
Eucgr.I02556 Eucalyptus grandis HOM05D000862 ORTHO05D000943 3.6e-06 56.2 120 35.8
Eucgr.I02558 Eucalyptus grandis HOM05D000862 ORTHO05D000943 3.6e-06 56.2 118 36.4
CAN.G140.49 Capsicum annuum HOM05D000862 ORTHO05D003588 4.6e-06 55.8 189 28.0
DCAR_024495 Daucus carota HOM05D000075 ORTHO05D003588 6.1e-06 55.5 164 28.7


User provided reference genes

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