Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001729m.g Eutrema salsugineum HOM05D011097 ORTHO05D012775 5.8e-118 427.6 213 100.0
Sp4g28460 Schrenkiella parvula HOM05D011097 ORTHO05D012775 2.4e-71 272.7 215 69.3
AL4G45770 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 4.6e-67 258.5 215 66.5
BolC4t21802H Brassica oleracea HOM05D011097 ORTHO05D012775 6.1e-67 258.1 225 60.0
A05p01330 Brassica napus HOM05D011097 ORTHO05D012775 3.0e-66 255.8 222 65.3
BraA05t19131Z Brassica rapa HOM05D011097 ORTHO05D012775 3.7e-64 248.8 223 63.7
BcaC02g12527 Brassica carinata HOM05D011097 ORTHO05D012775 3.5e-54 215.7 211 58.3
AT2G46455 Arabidopsis thaliana HOM05D011097 ORTHO05D012775 5.0e-53 211.8 193 63.2
C04p01510 Brassica napus HOM05D011097 ORTHO05D012775 8.2e-48 194.5 166 62.7
C04p01470 Brassica napus HOM05D011097 ORTHO05D012775 6.1e-43 178.3 179 57.5
C04p01480 Brassica napus HOM05D011097 ORTHO05D012775 2.3e-42 176.4 157 65.6
BcaC02g12529 Brassica carinata HOM05D011097 ORTHO05D012775 2.0e-41 173.3 155 60.6
AL2G13980 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 1.2e-30 137.5 121 65.3
BcaC02g12528 Brassica carinata HOM05D011097 ORTHO05D012775 8.6e-29 131.3 120 64.2
THA.LOC104817352 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.2e-27 127.5 210 44.8
THA.LOC104817347 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.6e-27 127.1 214 42.1
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 1.7e-24 117.1 201 40.3
THA.LOC104817353 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.1e-23 114.4 195 40.5
BolC4t21801H Brassica oleracea HOM05D011097 ORTHO05D012775 5.4e-23 112.1 123 52.8
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 4.3e-20 102.4 213 30.0
BcaB03g13955 Brassica carinata HOM05D011097 ORTHO05D012775 5.6e-20 102.1 157 45.2
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 3.6e-19 99.4 216 31.9
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 8.0e-19 98.2 210 31.4
BcaB08g36603 Brassica carinata HOM05D011097 ORTHO05D012775 8.0e-19 98.2 89 57.3
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 5.2e-18 95.5 215 31.2
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 5.8e-17 92.0 219 30.1
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.3e-16 90.9 214 29.4
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 2.2e-16 90.1 215 31.2
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 2.9e-16 89.7 217 29.0
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 1.4e-15 87.4 214 30.4
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 1.4e-15 87.4 219 30.1
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 1.4e-15 87.4 219 30.1
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 1.9e-15 87.0 215 30.2
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 7.0e-15 85.1 216 28.2
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.2e-14 84.3 222 29.7
Carub.0006s2587 Capsella rubella HOM05D011097 ORTHO05D012775 1.6e-14 84.0 121 43.0
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 3.5e-14 82.8 152 30.9
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 6.0e-14 82.0 146 30.8
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 7.8e-14 81.6 151 33.1
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 1.0e-13 81.3 130 33.8
Hund27202 Selenicereus undatus HOM05D002290 ORTHO05D002532 2.3e-13 80.1 223 26.9
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 5.0e-13 79.0 176 27.3
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 5.0e-13 79.0 150 30.7
TAR375G0429 Trochodendron aralioides HOM05D002290 ORTHO05D002532 1.5e-12 77.4 153 30.1
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 1.5e-12 77.4 149 32.2
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 4.3e-12 75.9 125 31.2
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 7.3e-12 75.1 144 28.5
Rhsim07G0082400 Rhododendron simsii HOM05D002290 ORTHO05D002532 7.3e-12 75.1 150 29.3
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 9.5e-12 74.7 135 32.6
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 9.5e-12 74.7 137 31.4
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 1.6e-11 73.9 152 32.9
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 1.6e-11 73.9 205 24.9
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 2.1e-11 73.6 158 28.5
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.8e-11 73.2 152 30.3
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 3.6e-11 72.8 152 30.3
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 3.6e-11 72.8 152 30.3
HanXRQChr17g0535271 Helianthus annuus HOM05D002290 ORTHO05D002532 4.7e-11 72.4 140 28.6
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 6.2e-11 72.0 153 28.8
QL02p030669 Quercus lobata HOM05D002290 ORTHO05D002532 6.2e-11 72.0 219 27.9
Aa31sc1839G10 Aethionema arabicum HOM05D002290 ORTHO05D002532 8.1e-11 71.6 218 30.3
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 8.1e-11 71.6 152 25.7
Gohir.A02G101200 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.1e-10 71.2 162 29.6
Gorai.003G080300 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.1e-10 71.2 155 29.0
Aa31LG1G27800 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.4e-10 70.9 214 28.5
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 1.4e-10 70.9 137 29.2
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 1.4e-10 70.9 156 28.8
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 1.8e-10 70.5 157 31.8
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 2.3e-10 70.1 148 29.1
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 3.1e-10 69.7 161 31.7
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 3.1e-10 69.7 145 28.3
Gorai.007G026600 Gossypium raimondii HOM05D002290 ORTHO05D002532 3.1e-10 69.7 145 28.3
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 4.0e-10 69.3 159 28.3
Ah.13g065850 Amaranthus hybridus HOM05D002290 ORTHO05D002532 5.2e-10 68.9 129 31.0
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 5.2e-10 68.9 157 25.5
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 5.2e-10 68.9 219 26.5
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 5.2e-10 68.9 141 28.4
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 5.2e-10 68.9 152 30.9
MSTRG.13884 Avicennia marina HOM05D002290 ORTHO05D002532 6.8e-10 68.6 151 31.8
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 6.8e-10 68.6 139 29.5
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 6.8e-10 68.6 223 26.9
SHI06993 Sapria himalayana HOM05D002290 ORTHO05D002532 8.9e-10 68.2 230 25.2
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 1.2e-09 67.8 154 26.6
Aqoxy5G04225 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 1.5e-09 67.4 104 29.8
Cfa006406 Carpinus fangiana HOM05D002290 ORTHO05D002532 1.5e-09 67.4 224 27.7
Cfa006407 Carpinus fangiana HOM05D002290 ORTHO05D002532 1.5e-09 67.4 224 27.7
Oeu009958.1 Olea europaea HOM05D002290 ORTHO05D002532 1.5e-09 67.4 143 32.2
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 2.0e-09 67.0 163 28.8
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 2.0e-09 67.0 152 27.6
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 3.4e-09 66.2 133 29.3
Migut.E01251 Erythranthe guttata HOM05D002290 ORTHO05D002532 3.4e-09 66.2 152 30.3
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 3.4e-09 66.2 130 26.9
Psat7g112000 Pisum sativum HOM05D002290 ORTHO05D002532 3.4e-09 66.2 107 29.9
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 3.4e-09 66.2 152 28.3
Sc23g0002130 Simmondsia chinensis HOM05D002290 ORTHO05D002532 3.4e-09 66.2 188 27.1
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 4.4e-09 65.9 119 29.4
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 4.4e-09 65.9 128 27.3
Oeu034335.1 Olea europaea HOM05D002290 ORTHO05D002532 4.4e-09 65.9 151 31.1
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 5.8e-09 65.5 127 29.1
THA.LOC104821823 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 5.8e-09 65.5 207 24.2
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 7.5e-09 65.1 152 24.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 9.8e-09 64.7 122 30.3
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 9.8e-09 64.7 151 27.8
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 9.8e-09 64.7 150 26.7
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 9.8e-09 64.7 139 28.1
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 9.8e-09 64.7 147 27.2
arahy.Tifrunner.gnm1.ann1.H71861 Arachis hypogaea HOM05D002290 ORTHO05D002532 1.3e-08 64.3 138 31.2
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 1.3e-08 64.3 137 27.0
Hund14222 Selenicereus undatus HOM05D002290 ORTHO05D002532 1.7e-08 63.9 144 25.7
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 2.2e-08 63.5 151 25.2
arahy.Tifrunner.gnm1.ann1.R32419 Arachis hypogaea HOM05D002290 ORTHO05D002532 2.2e-08 63.5 138 31.9
Migut.E01249 Erythranthe guttata HOM05D002290 ORTHO05D002532 2.2e-08 63.5 135 30.4
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 2.2e-08 63.5 150 26.7
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 2.2e-08 63.5 150 26.7
Peaxi162Scf00074g00928 Petunia axillaris HOM05D002290 ORTHO05D002532 2.9e-08 63.2 132 28.0
RcHm_v2.0_Chr1g0359321 Rosa chinensis HOM05D002290 ORTHO05D002532 2.9e-08 63.2 128 29.7
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 2.9e-08 63.2 130 27.7
SGA_v2.0_scaffold305G47968 Striga asiatica HOM05D000324 ORTHO05D001014 2.9e-08 63.2 143 31.5
AUR62023472 Chenopodium quinoa HOM05D002290 ORTHO05D002532 3.7e-08 62.8 95 32.6
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 3.7e-08 62.8 107 27.1
Glyma.13G182900 Glycine max HOM05D002290 ORTHO05D002532 3.7e-08 62.8 107 27.1
VMungo0251G0742 Vigna mungo HOM05D002290 ORTHO05D002532 3.7e-08 62.8 107 29.9
AUR62004481 Chenopodium quinoa HOM05D002290 ORTHO05D002532 4.9e-08 62.4 110 30.9
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 6.4e-08 62.0 134 27.6
THA.LOC104821813 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 6.4e-08 62.0 109 26.6
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 8.3e-08 61.6 129 27.9
arahy.Tifrunner.gnm1.ann1.SMD748 Arachis hypogaea HOM05D002290 ORTHO05D002532 1.1e-07 61.2 139 30.9
PSO063G5717 Papaver somniferum HOM05D002290 ORTHO05D002532 1.4e-07 60.8 118 29.7
PSO170G3987 Papaver somniferum HOM05D002290 ORTHO05D002532 1.4e-07 60.8 118 29.7
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 1.4e-07 60.8 143 25.2
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 1.9e-07 60.5 129 30.2
AUR62010838 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.9e-07 60.5 76 30.3
Cc00_g30690 Coffea canephora HOM05D002290 ORTHO05D002532 1.9e-07 60.5 121 28.9
Cc08_g16040 Coffea canephora HOM05D002290 ORTHO05D002532 1.9e-07 60.5 121 28.9
AUR62023535 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.4e-07 60.1 110 28.2
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 2.4e-07 60.1 137 25.5
TPR.G12131 Trifolium pratense HOM05D002290 ORTHO05D002532 2.4e-07 60.1 153 24.2
CANSAT21G2386 Cannabis sativa HOM05D002290 ORTHO05D002532 3.2e-07 59.7 157 25.5
Lalb_Chr25g0283581 Lupinus albus HOM05D002290 ORTHO05D002532 3.2e-07 59.7 140 26.4
DCAR_005044 Daucus carota HOM05D002290 ORTHO05D002532 4.1e-07 59.3 140 25.7
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 5.4e-07 58.9 125 25.6
Actinidia04202 Actinidia chinensis HOM05D002290 ORTHO05D002532 7.1e-07 58.5 117 30.8
Phvul.002G225801 Phaseolus vulgaris HOM05D002290 ORTHO05D002532 9.2e-07 58.2 107 28.0
Potri.006G073000 Populus trichocarpa HOM05D002290 ORTHO05D002532 9.2e-07 58.2 130 28.5
Prupe.5G118500 Prunus persica HOM05D002290 ORTHO05D002532 1.2e-06 57.8 141 25.5
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.6e-06 57.4 130 24.6
PGR042G1530 Punica granatum HOM05D002290 ORTHO05D002532 2.1e-06 57.0 110 28.2
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 3.5e-06 56.2 109 29.4
Zm00001eb021300 Zea mays HOM05D002290 ORTHO05D002532 3.5e-06 56.2 130 26.2
MSTRG.11925 Avicennia marina HOM05D002290 ORTHO05D002532 4.6e-06 55.8 143 27.3
AT3G49155 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 6.0e-06 55.5 59 40.7
HPP92_021112 Vanilla planifolia HOM05D002290 ORTHO05D002532 7.8e-06 55.1 123 28.5


User provided reference genes

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