Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.8e-56 221.9 122 100.0
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 8.3e-53 210.3 122 93.4
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 8.3e-53 210.3 122 95.1
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 4.1e-52 208.0 123 95.1
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 5.4e-52 207.6 122 92.6
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 9.2e-52 206.8 123 94.3
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.2e-51 206.5 121 93.4
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.7e-51 205.3 122 94.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.7e-51 205.3 122 94.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.8e-51 203.8 122 94.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.0e-50 203.4 116 94.8
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.3e-50 202.2 123 91.9
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 3.0e-50 201.8 118 93.2
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.9e-50 201.4 119 93.3
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.9e-50 201.4 119 93.3
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 8.6e-50 200.3 118 92.4
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.3e-49 198.4 122 91.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.3e-49 198.0 124 90.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.3e-47 192.2 123 87.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 5.2e-47 191.0 119 88.2
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-46 189.9 118 89.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 8.3e-45 183.7 119 85.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.1e-44 183.3 122 83.6
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.2e-44 181.8 114 82.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.2e-44 181.8 114 82.5
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 7.1e-44 180.6 122 85.2
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 7.1e-44 180.6 119 81.5
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 9.2e-44 180.3 121 79.3
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.7e-43 178.7 119 80.7
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.5e-43 178.3 112 83.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 7.8e-43 177.2 111 83.8
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.9e-42 174.9 114 79.8
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 5.1e-42 174.5 112 82.1
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-42 174.1 119 78.2
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 6.6e-42 174.1 114 79.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 6.6e-42 174.1 119 78.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.1e-41 173.3 119 79.0
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-41 173.3 119 77.3
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.5e-41 172.9 109 82.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.5e-41 172.9 109 82.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.9e-41 172.6 122 73.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-41 171.8 119 76.5
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 4.3e-41 171.4 120 79.2
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 5.6e-41 171.0 111 78.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 5.6e-41 171.0 120 77.5
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.3e-41 170.6 109 82.6
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 9.5e-41 170.2 122 74.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.5e-41 170.2 119 76.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.5e-41 170.2 114 80.7
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.2e-40 169.9 119 76.5
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.1e-40 169.1 106 83.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 2.8e-40 168.7 117 76.9
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-40 168.7 114 77.2
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.6e-40 168.3 114 77.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 8.1e-40 167.2 114 76.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 8.1e-40 167.2 114 75.4
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.1e-39 166.8 108 81.5
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.8e-39 166.0 111 80.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-39 165.6 114 77.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.1e-39 165.2 114 78.9
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.0e-39 164.9 111 80.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 4.0e-39 164.9 120 70.8
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.0e-39 164.9 114 78.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.0e-39 164.9 114 78.9
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 4.0e-39 164.9 122 73.0
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 8.9e-39 163.7 120 73.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.2e-38 163.3 117 73.5
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.0e-38 162.5 114 73.7
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.6e-38 162.2 107 86.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.6e-38 162.2 112 72.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 5.8e-38 161.0 117 71.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.2e-37 159.1 127 70.9
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.7e-37 158.3 125 69.6
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.7e-37 158.3 125 69.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.1e-36 156.8 121 69.4
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-36 156.8 101 79.2
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 80.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 80.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 80.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 80.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 2.4e-36 155.6 117 71.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 5.4e-36 154.5 100 79.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 7.1e-36 154.1 111 70.3
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.1e-36 154.1 116 70.7
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 7.1e-36 154.1 111 73.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 7.1e-36 154.1 118 68.6
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.2e-35 153.3 115 68.7
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.7e-35 152.1 117 70.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.0e-35 151.0 111 69.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.7e-34 149.4 104 70.2
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.3e-34 149.1 118 66.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.3e-34 149.1 118 66.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.3e-34 149.1 118 66.9
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.9e-34 148.3 100 73.0
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.9e-34 148.3 119 68.9
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.9e-34 148.3 114 69.3
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 5.1e-34 147.9 104 72.1
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 6.6e-34 147.5 107 68.2
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 6.6e-34 147.5 111 68.5
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.1e-33 146.7 104 75.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.9e-33 146.0 117 65.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.9e-33 146.0 118 66.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.9e-33 146.0 118 66.1
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.5e-33 145.6 105 74.3
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.3e-33 145.2 114 65.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 3.3e-33 145.2 125 64.0
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 4.3e-33 144.8 103 69.9
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.2e-32 143.3 119 64.7
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.6e-32 142.9 111 70.3
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.6e-32 142.9 117 65.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.1e-32 142.5 120 64.2
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.8e-32 142.1 109 65.1
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.8e-32 142.1 113 64.6
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 6.2e-32 141.0 98 71.4
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 8.1e-32 140.6 118 65.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.8e-31 139.4 114 67.5
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 4.0e-31 138.3 119 62.2
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.5e-30 136.3 96 72.9
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 7.6e-30 134.0 89 87.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 7.6e-30 134.0 89 87.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.2e-29 132.5 95 74.7
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.8e-29 131.7 85 77.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.4e-28 127.9 102 67.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.0e-26 123.6 107 63.6
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.3e-26 123.2 112 56.2
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.7e-26 122.9 103 63.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-25 118.6 87 72.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.4e-23 112.5 88 67.0
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.7e-19 99.0 98 52.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.0e-18 97.1 67 74.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 8.7e-18 94.0 64 68.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-17 93.6 69 69.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.1e-17 93.6 68 67.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-17 93.6 102 52.9
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.3e-17 92.0 57 82.5
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.6e-16 89.7 70 65.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.4e-15 85.9 93 55.9
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.0e-15 85.1 115 52.2
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-14 83.2 74 60.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.7e-13 79.7 56 69.6
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.9e-13 78.2 73 58.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-12 76.3 85 52.9
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 4.2e-12 75.1 103 44.7
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-11 73.6 68 58.8
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.7e-11 72.4 115 41.7
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 3.5e-11 72.0 45 80.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.3e-09 65.1 56 60.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.1e-08 62.8 35 88.6
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 3.7e-08 62.0 52 61.5
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 3.7e-08 62.0 69 49.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-07 60.5 82 46.3
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.8e-07 59.7 122 32.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 3.1e-07 58.9 59 52.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.4e-06 55.5 47 57.4


User provided reference genes

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