Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.3e-85 318.9 171 100.0
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 1.2e-73 280.0 171 88.9
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 2.7e-73 278.9 174 85.6
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 3.5e-73 278.5 171 86.5
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 3.5e-73 278.5 173 86.7
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 1.7e-72 276.2 171 85.4
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 2.1e-70 269.2 171 85.4
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 2.1e-70 269.2 171 85.4
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 2.8e-70 268.9 171 86.5
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 6.8e-69 264.2 171 84.2
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 6.8e-69 264.2 171 84.2
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 6.8e-69 264.2 171 84.2
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 1.5e-68 263.1 171 83.6
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-64 250.0 161 84.5
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 3.0e-64 248.8 161 83.9
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.5e-63 246.5 168 77.4
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 2.0e-60 236.1 174 73.0
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-56 223.4 146 83.6
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 1.4e-53 213.4 170 64.7
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 3.1e-53 212.2 172 66.3
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 1.2e-52 210.3 170 64.1
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 2.2e-51 206.1 170 62.9
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.2e-49 200.3 171 61.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 1.6e-49 199.9 170 64.1
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 2.7e-49 199.1 174 61.5
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 2.5e-47 192.6 175 59.4
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 3.3e-47 192.2 170 60.6
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 2.1e-46 189.5 182 56.6
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 2.1e-46 189.5 170 60.0
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 3.6e-46 188.7 173 57.2
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 4.7e-46 188.3 175 56.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 6.2e-46 188.0 171 56.1
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.4e-45 186.8 174 56.9
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 3.1e-45 185.7 170 57.1
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 3.1e-45 185.7 174 57.5
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 8.9e-45 184.1 170 53.5
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.2e-44 183.7 171 55.0
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 1.5e-44 183.3 173 56.1
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.5e-44 183.3 174 56.9
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 2.6e-44 182.6 174 55.7
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 4.4e-44 181.8 174 56.3
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 4.4e-44 181.8 174 56.3
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 4.4e-44 181.8 159 60.4
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 1.3e-43 180.3 170 56.5
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 2.2e-43 179.5 169 54.4
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.2e-43 179.5 169 55.6
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.2e-43 179.5 169 54.4
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 2.9e-43 179.1 172 53.5
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.9e-43 179.1 171 57.3
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 2.9e-43 179.1 169 55.6
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 8.4e-43 177.6 169 55.0
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 8.4e-43 177.6 173 56.6
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.1e-42 177.2 170 55.9
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 3.2e-42 175.6 155 58.1
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 2.1e-41 172.9 169 55.6
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 2.7e-41 172.6 169 55.0
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 3.5e-41 172.2 169 55.0
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.5e-41 172.2 169 55.0
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 7.8e-41 171.0 175 55.4
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 3.9e-40 168.7 170 53.5
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.1e-39 167.2 170 54.1
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.5e-39 166.0 165 55.2
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 3.3e-39 165.6 169 52.7
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 6.2e-38 161.4 170 52.4
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 6.9e-37 157.9 175 50.3
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 1.2e-36 157.1 170 48.2
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.5e-36 156.8 173 48.6
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.5e-36 156.8 168 49.4
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.6e-36 156.0 169 49.7
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 9.9e-36 154.1 171 51.5
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 2.2e-35 152.9 167 46.1
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 4.9e-35 151.8 162 51.9
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.4e-34 150.2 171 49.1
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.9e-34 149.8 169 48.5
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 2.4e-34 149.4 171 47.4
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 2.4e-34 149.4 171 49.1
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 6.0e-33 144.8 167 46.1
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 1.3e-32 143.7 168 46.4
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 2.3e-32 142.9 169 47.3
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.8e-30 136.0 169 45.0
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 6.2e-30 134.8 167 43.7
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 5.3e-29 131.7 168 45.8
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 2.0e-28 129.8 170 45.3
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 3.4e-28 129.0 142 50.7
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 4.5e-28 128.6 168 47.0
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 7.6e-28 127.9 151 45.0
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 4.9e-27 125.2 169 45.6
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 8.4e-27 124.4 169 46.2
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 4.2e-26 122.1 123 55.3
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 7.1e-26 121.3 169 42.6
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.6e-25 120.2 169 43.8
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 1.4e-21 107.1 147 43.5
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 2.4e-21 106.3 131 48.1
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 5.5e-18 95.1 155 41.3
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 7.1e-18 94.7 170 37.6
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-16 90.5 112 45.5
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.5e-12 77.0 136 36.0
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.7e-11 73.6 140 33.6
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 4.2e-10 68.9 63 57.1
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 5.5e-10 68.6 138 31.2
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 5.1e-08 62.0 71 43.7
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 1.5e-07 60.5 88 42.0


User provided reference genes

Program Settings