Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 1.3e-142 509.6 243 100.0
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 3.5e-127 458.4 243 90.1
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 1.8e-123 446.0 244 88.5
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 8.9e-123 443.7 243 88.5
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 1.9e-120 436.0 245 89.0
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 4.0e-115 418.3 247 85.4
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 4.9e-113 411.4 249 83.1
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.1e-112 408.3 249 82.7
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 8.6e-110 400.6 240 82.1
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 3.0e-86 322.4 239 64.9
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 4.8e-84 315.1 236 64.0
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 8.1e-84 314.3 237 65.4
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 1.1e-83 313.9 240 65.8
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 5.3e-83 311.6 240 64.6
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 3.4e-82 308.9 236 63.6
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 4.5e-82 308.5 236 61.4
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 5.8e-82 308.1 236 62.3
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 6.4e-81 304.7 242 62.8
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 8.4e-81 304.3 235 60.9
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 8.4e-81 304.3 242 63.2
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 8.4e-81 304.3 264 59.8
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 1.1e-80 303.9 240 62.5
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 1.4e-80 303.5 200 69.0
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 1.4e-80 303.5 246 62.6
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 2.5e-80 302.8 243 60.9
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 2.5e-80 302.8 227 60.8
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 2.5e-80 302.8 215 66.5
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 3.2e-80 302.4 236 61.9
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 4.2e-80 302.0 215 66.5
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 5.5e-80 301.6 214 67.3
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 5.5e-80 301.6 226 64.6
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 7.1e-80 301.2 240 60.8
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 1.6e-79 300.1 252 59.5
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 2.1e-79 299.7 237 61.6
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 2.1e-79 299.7 242 62.0
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 2.7e-79 299.3 237 63.3
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 1.0e-78 297.4 237 59.9
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 2.3e-78 296.2 196 69.9
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 2.3e-78 296.2 227 63.0
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 2.3e-78 296.2 233 63.1
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 8.7e-78 294.3 241 59.3
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 8.7e-78 294.3 204 64.7
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 8.7e-78 294.3 238 61.8
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 1.5e-77 293.5 233 61.4
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 1.5e-77 293.5 182 71.4
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-77 293.1 237 59.5
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 2.5e-77 292.7 200 69.5
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.3e-77 292.4 237 59.1
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-77 292.0 237 59.5
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 9.6e-77 290.8 235 58.3
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 9.6e-77 290.8 243 58.8
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 1.3e-76 290.4 184 70.7
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 1.6e-76 290.0 234 61.1
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 2.1e-76 289.7 215 64.7
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 2.1e-76 289.7 217 64.5
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 2.8e-76 289.3 209 65.1
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 2.8e-76 289.3 247 57.5
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 6.2e-76 288.1 208 65.9
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 6.2e-76 288.1 243 59.3
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 6.2e-76 288.1 245 57.6
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 8.2e-76 287.7 201 66.7
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 1.1e-75 287.3 202 66.8
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.2e-74 283.9 197 67.0
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 1.2e-74 283.9 177 72.9
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 2.6e-74 282.7 229 58.5
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 3.4e-74 282.3 240 60.0
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 1.0e-73 280.8 196 66.8
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 2.9e-73 279.3 195 66.2
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 1.2e-71 273.9 173 72.3
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 1.0e-70 270.8 183 69.4
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 2.3e-70 269.6 205 64.4
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 3.0e-70 269.2 214 60.3
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 6.7e-70 268.1 243 57.6
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 1.1e-69 267.3 187 66.8
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 4.3e-69 265.4 181 68.5
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 1.8e-67 260.0 168 70.2
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-67 258.8 219 58.0
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 5.3e-67 258.5 219 60.3
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 9.0e-67 257.7 212 59.9
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.9e-64 250.0 197 61.4
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 7.2e-64 248.1 368 40.8
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 2.1e-63 246.5 179 65.4
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.4e-59 233.8 175 62.9
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 1.4e-59 233.8 195 60.0
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 7.7e-58 228.0 230 53.0
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 1.9e-56 223.4 194 60.8
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 2.1e-55 219.9 200 57.0
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.0e-54 216.1 156 66.7
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 3.9e-54 215.7 176 60.2
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 7.4e-53 211.5 120 75.8
CARHR141360 Cardamine hirsuta HOM05D007525 ORTHO05D003398 7.0e-51 204.9 123 84.6
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 1.6e-47 193.7 143 64.3
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 1.7e-44 183.7 198 46.0
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 3.8e-41 172.6 150 58.0
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 1.6e-39 167.2 217 41.9
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 5.2e-38 162.2 205 38.5
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 8.8e-38 161.4 179 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 1.2e-31 141.0 163 41.7
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 1.6e-31 140.6 176 39.8
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 5.9e-26 122.1 63 73.0
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 7.2e-24 115.2 210 31.0
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 3.0e-22 109.8 113 50.4
Manes.17G000837 Manihot esculenta HOM05D007525 ORTHO05D003398 4.9e-20 102.4 65 66.2
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 2.4e-19 100.1 127 36.2
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.6e-18 97.4 190 32.6
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 1.6e-18 97.4 132 36.4
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 2.0e-18 97.1 133 36.8
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 2.7e-18 96.7 133 35.3
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 1.3e-17 94.4 207 32.4
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 1.3e-17 94.4 131 35.1
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 2.9e-17 93.2 131 35.1
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 2.9e-17 93.2 131 35.1
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 2.9e-17 93.2 200 32.5
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 3.9e-17 92.8 132 34.8
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 5.0e-17 92.4 180 32.8
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 8.6e-17 91.7 193 30.6
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 8.6e-17 91.7 128 34.4
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.5e-16 90.9 132 35.6
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 1.9e-16 90.5 54 74.1
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.5e-16 90.1 132 34.1
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.5e-16 90.1 132 34.1
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 2.5e-16 90.1 131 33.6
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 3.3e-16 89.7 152 32.2
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.3e-16 89.7 206 30.6
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 3.3e-16 89.7 128 35.9
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 4.3e-16 89.4 134 34.3
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 4.3e-16 89.4 132 34.1
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 4.3e-16 89.4 142 33.8
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 4.3e-16 89.4 138 35.5
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 5.6e-16 89.0 128 34.4
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 5.6e-16 89.0 190 32.6
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 5.6e-16 89.0 131 34.4
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 5.6e-16 89.0 222 29.3
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 7.3e-16 88.6 138 30.4
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 9.5e-16 88.2 134 34.3
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 1.2e-15 87.8 210 29.5
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 1.6e-15 87.4 131 33.6
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 1.6e-15 87.4 132 34.1
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 2.1e-15 87.0 128 33.6
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 2.1e-15 87.0 133 34.6
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 2.1e-15 87.0 132 34.8
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 2.8e-15 86.7 157 32.5
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 2.8e-15 86.7 134 32.8
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 3.6e-15 86.3 131 32.1
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 3.6e-15 86.3 132 32.6
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 3.6e-15 86.3 134 32.1
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 4.7e-15 85.9 132 32.6
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 4.7e-15 85.9 128 30.5
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 4.7e-15 85.9 131 33.6
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 6.1e-15 85.5 231 31.2
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 8.0e-15 85.1 128 31.2
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 1.0e-14 84.7 209 30.1
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 1.0e-14 84.7 132 32.6
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 1.0e-14 84.7 128 32.8
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 1.4e-14 84.3 128 31.2
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.8e-14 84.0 210 29.5
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 1.8e-14 84.0 132 31.8
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 2.3e-14 83.6 127 29.9
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 2.3e-14 83.6 130 33.1
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 4.0e-14 82.8 134 33.6
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 5.2e-14 82.4 130 32.3
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 1.5e-13 80.9 144 32.6
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 2.6e-13 80.1 52 71.2
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 3.4e-13 79.7 135 31.1
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 3.7e-12 76.3 208 26.9
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 8.3e-12 75.1 183 28.4
TPR.G28505 Trifolium pratense HOM05D007525 ORTHO05D003398 2.7e-10 70.1 96 46.9
Mapoly0011s0142 Marchantia polymorpha HOM05D006905 ORTHO05D003398 3.5e-10 69.7 173 28.9
MCO13G637 Micromonas commoda HOM05D006905 ORTHO05D003398 4.6e-10 69.3 135 27.4
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 4.6e-10 69.3 156 27.6
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 6.0e-10 68.9 152 28.3
CBR_g23481 Chara braunii HOM05D006905 ORTHO05D003398 3.9e-09 66.2 174 24.1
TPR.G34652 Trifolium pratense HOM05D007525 ORTHO05D003398 8.6e-09 65.1 36 69.4
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.9e-08 63.9 113 31.0
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 3.3e-08 63.2 104 30.8
PRCOL_00001703 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 9.5e-08 61.6 138 28.3
TPR.G20765 Trifolium pratense HOM05D007525 ORTHO05D003398 9.5e-08 61.6 36 66.7
Pp3c2_27980 Physcomitrium patens HOM05D006905 ORTHO05D003398 2.8e-07 60.1 132 25.0
arahy.Tifrunner.gnm1.ann1.N7GLTS Arachis hypogaea HOM05D006905 ORTHO05D003398 4.7e-07 59.3 127 26.8
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 4.7e-07 59.3 124 26.6
CBR_g23482 Chara braunii HOM05D006905 ORTHO05D003398 6.2e-07 58.9 130 27.7
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 2.3e-06 57.0 80 33.8


User provided reference genes

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