Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.7e-154 548.1 269 100.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 7.2e-150 533.9 269 96.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 4.4e-147 524.6 269 94.4
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.1e-145 520.0 269 93.7
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.4e-145 519.6 270 94.4
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 2.4e-145 518.8 269 93.7
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 3.1e-145 518.5 269 93.7
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 9.2e-145 516.9 269 92.9
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.7e-144 515.4 270 93.7
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 1.0e-143 513.5 270 93.3
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 6.6e-143 510.8 270 93.0
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 8.9e-140 500.4 286 87.8
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.4e-132 476.5 269 82.9
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 3.1e-132 475.3 267 84.3
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.2e-131 473.4 269 82.5
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 80.7
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 83.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 81.4
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 81.4
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 81.8
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 9.8e-131 470.3 268 82.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 81.0
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 82.5
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 82.2
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.7e-130 469.5 269 80.7
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 80.7
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 82.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 80.7
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 3.7e-130 468.4 271 80.8
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 81.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 4.9e-130 468.0 269 81.4
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 4.9e-130 468.0 270 83.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 6.4e-130 467.6 263 83.7
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 81.4
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 81.4
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 81.4
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 81.8
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 81.4
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.9e-129 466.1 271 81.5
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 81.4
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.4e-129 465.7 270 81.9
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.1e-129 464.9 271 80.8
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 4.1e-129 464.9 268 81.3
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 81.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 81.0
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 7.0e-129 464.2 269 81.4
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 80.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.2e-128 463.4 269 82.2
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-128 462.6 269 80.3
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.0e-128 462.6 269 80.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.0e-128 462.6 269 80.7
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-128 461.1 269 79.9
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 79.9
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 82.9
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.0e-127 460.3 269 79.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.0e-127 460.3 269 81.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 79.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 79.9
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 78.8
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.7e-127 459.5 269 80.7
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.3e-127 459.1 266 81.2
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.0e-127 458.8 269 79.9
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.9e-127 458.4 274 80.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 8.6e-127 457.2 281 76.5
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.5e-126 455.7 269 79.6
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 3.3e-126 455.3 269 79.6
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.3e-126 454.9 269 79.6
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-126 454.9 275 78.2
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 4.3e-126 454.9 269 77.7
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 5.6e-126 454.5 270 79.6
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 7.3e-126 454.1 269 79.6
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 269 78.4
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 275 78.2
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-125 453.4 275 78.2
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 1.6e-125 453.0 269 78.1
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.4e-124 449.9 268 79.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.3e-124 449.1 271 79.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.3e-124 449.1 261 79.3
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 76.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-123 445.3 269 78.1
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 7.5e-123 444.1 269 76.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 9.8e-123 443.7 269 76.2
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.2e-122 442.6 306 72.2
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 4.9e-122 441.4 269 78.4
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.1e-121 440.3 269 76.2
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-121 439.1 269 77.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 76.2
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 76.2
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 75.5
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.2e-121 437.2 269 78.1
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 9.2e-121 437.2 267 74.9
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 9.2e-121 437.2 269 75.1
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.2e-120 436.8 268 75.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.6e-120 436.4 267 76.8
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 77.3
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 77.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 77.3
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 74.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.9e-119 431.8 268 75.4
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.3e-118 428.3 275 76.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 77.3
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.6e-118 427.9 269 77.0
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 77.0
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 4.7e-117 424.9 268 73.1
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 6.2e-117 424.5 267 74.2
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 73.6
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 74.3
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.6e-115 419.1 244 80.3
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 74.0
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 1.3e-114 416.8 266 72.6
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.9e-113 412.9 252 78.2
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.4e-113 412.5 269 70.3
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 7.1e-113 411.0 269 71.4
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.2e-112 410.2 269 74.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.7e-112 409.1 269 72.1
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 4.6e-112 408.3 269 72.1
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-112 407.5 269 72.9
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 3.9e-111 405.2 269 71.4
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 5.1e-111 404.8 269 74.3
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-109 399.1 269 71.4
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.8e-109 399.1 269 70.3
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.1e-108 395.6 270 70.0
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.9e-108 394.0 270 69.3
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.2e-107 393.7 235 77.4
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-107 393.7 269 68.4
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-107 393.7 276 68.1
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-107 393.7 270 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.6e-107 392.5 270 69.3
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-107 392.5 271 68.3
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.8e-107 391.3 271 68.3
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 9.9e-107 390.6 267 68.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.2e-106 389.4 271 67.9
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-106 388.7 276 67.4
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.4e-106 387.5 276 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.4e-105 386.7 269 68.0
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.2e-105 385.2 237 76.8
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 5.4e-105 384.8 269 66.9
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-104 382.9 272 69.9
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.1e-104 382.9 270 67.0
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 3.3e-102 375.6 212 83.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 3.3e-102 375.6 270 66.3
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.6e-102 374.8 271 66.4
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 8.1e-101 370.9 270 65.6
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 7.6e-99 364.4 271 64.9
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 4.9e-98 361.7 271 64.2
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 9.3e-97 357.5 248 68.5
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.3e-95 352.8 211 79.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.8e-92 343.2 295 58.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.2e-91 340.5 197 81.7
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 3.0e-87 325.9 217 71.9
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.5e-86 322.8 187 80.7
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.2e-85 318.2 189 77.2
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 6.0e-80 301.6 269 55.8
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.4e-63 247.3 188 64.9
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.4e-57 227.3 181 63.0
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.5e-57 226.5 271 45.0
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-57 226.5 133 78.2
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 7.9e-56 221.5 143 73.4
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 3.7e-53 212.6 271 43.9
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.4e-52 210.7 136 69.9
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 9.1e-52 208.0 188 59.6
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 4.1e-44 182.6 269 41.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.0e-39 166.4 278 35.6
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 2.0e-35 153.7 88 81.8
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.9e-34 149.8 82 86.6
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-33 147.5 94 68.1
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.4e-30 136.0 109 61.5
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 4.1e-28 129.4 77 76.6
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.3e-25 119.8 68 80.9
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-22 111.3 108 51.9
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.7e-22 109.0 69 73.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 6.4e-21 105.5 67 67.2
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.9e-18 96.3 65 75.4
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.5e-17 94.4 49 87.8
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.5e-17 94.4 49 87.8
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.8e-16 90.1 82 56.1
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.5e-14 84.3 57 75.4
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 2.6e-14 83.6 57 73.7
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 2.2e-13 80.5 60 60.0
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 6.0e-11 72.4 51 72.5
A06p15620 Brassica napus HOM05D003837 ORTHO05D033622 6.8e-07 58.9 48 64.6
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.9e-07 58.5 51 56.9
AUR62040596 Chenopodium quinoa HOM05D003837 ORTHO05D009742 7.5e-06 55.5 75 52.0


User provided reference genes

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