Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 6.2e-157 557.4 275 100.0
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.9e-127 458.4 275 84.7
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.6e-118 429.1 275 79.6
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.4e-110 402.1 275 76.0
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 4.1e-108 395.2 275 74.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 5.4e-108 394.8 276 73.9
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 2.6e-94 349.4 281 71.2
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-93 346.7 274 71.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 4.9e-93 345.1 278 69.8
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 4.9e-93 345.1 278 69.8
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 6.4e-85 318.2 272 67.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-83 312.4 276 65.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 3.5e-83 312.4 276 65.2
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.2e-76 289.3 277 62.8
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 5.4e-76 288.5 287 58.9
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.9e-68 263.5 277 54.9
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.3e-65 251.5 267 53.2
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.5e-57 226.5 315 44.8
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.6e-56 223.8 293 46.1
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 4.8e-56 222.2 308 45.8
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.4e-55 220.7 309 45.3
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 4.0e-55 219.2 278 44.6
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 2.6e-54 216.5 316 44.0
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 3.4e-54 216.1 318 42.8
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 4.5e-54 215.7 311 44.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 5.8e-54 215.3 299 45.8
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 5.8e-54 215.3 317 41.0
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 7.6e-54 214.9 322 42.9
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.2e-53 213.4 306 44.8
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 8.4e-53 211.5 289 42.6
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.4e-52 210.7 296 47.0
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.4e-52 209.9 314 42.7
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 5.5e-52 208.8 308 43.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 7.1e-52 208.4 281 43.1
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.1e-51 206.8 310 41.6
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.6e-51 205.7 316 42.7
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 6.0e-51 205.3 319 42.3
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 6.0e-51 205.3 308 43.2
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.0e-50 204.5 294 41.2
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.3e-50 204.1 320 43.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.8e-50 203.8 316 43.4
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.3e-50 203.4 316 40.5
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.3e-50 203.4 323 41.8
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-50 202.6 293 42.3
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 8.7e-50 201.4 274 44.9
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.1e-49 201.1 311 42.4
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.1e-49 201.1 326 42.0
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.5e-49 200.7 320 41.9
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.9e-49 200.3 301 42.2
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 2.5e-49 199.9 313 39.3
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.3e-49 199.5 317 42.6
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 4.3e-49 199.1 323 40.9
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 5.6e-49 198.7 317 41.0
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 7.4e-49 198.4 319 41.7
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.6e-48 197.2 315 39.0
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.6e-48 197.2 305 42.3
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.6e-48 197.2 327 41.3
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.8e-48 196.4 308 40.9
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.8e-48 196.4 304 41.8
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 8.1e-48 194.9 318 40.6
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 8.1e-48 194.9 314 38.9
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.1e-47 194.5 298 41.6
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.4e-47 194.1 319 39.8
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.8e-47 193.7 322 41.0
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.8e-47 193.7 322 41.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 2.4e-47 193.4 305 42.0
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.4e-47 193.4 322 40.1
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 2.4e-47 193.4 321 40.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.0e-47 192.6 319 42.0
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 6.9e-47 191.8 293 40.3
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.9e-47 191.8 322 41.0
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.0e-47 191.4 322 40.7
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.0e-47 191.4 322 41.0
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.2e-46 191.0 314 41.7
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.2e-46 191.0 324 38.6
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.0e-46 190.3 316 38.9
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.6e-46 189.9 279 43.0
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 2.6e-46 189.9 322 41.9
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 4.5e-46 189.1 311 39.2
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.5e-46 189.1 297 41.4
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.8e-46 188.7 321 38.3
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 7.6e-46 188.3 320 40.0
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.0e-45 188.0 320 41.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.3e-45 187.6 336 38.7
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.3e-45 187.6 246 48.0
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 2.2e-45 186.8 300 42.3
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.9e-45 185.7 322 40.4
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 4.9e-45 185.7 322 37.3
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 6.5e-45 185.3 313 40.9
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 6.5e-45 185.3 280 43.2
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.1e-44 184.5 261 42.9
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.5e-44 183.3 268 42.9
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 4.2e-44 182.6 307 40.1
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 5.5e-44 182.2 309 38.5
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 7.1e-44 181.8 304 39.1
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 9.3e-44 181.4 314 39.5
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.2e-43 181.0 284 39.8
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.6e-43 180.6 287 41.5
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.0e-42 177.9 327 39.4
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.3e-42 176.8 268 42.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.3e-42 176.8 284 42.3
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 3.0e-42 176.4 308 38.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-42 176.0 318 36.8
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 5.1e-42 175.6 336 36.0
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.9e-41 173.7 284 41.9
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.3e-41 172.6 340 35.3
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 7.4e-41 171.8 243 42.4
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.6e-40 170.6 285 37.5
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.6e-40 170.6 317 36.6
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.1e-40 170.2 283 37.8
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.8e-40 169.9 272 40.4
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.3e-40 168.7 331 36.9
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 8.2e-40 168.3 317 35.6
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 1.4e-39 167.5 329 36.5
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.4e-39 166.8 279 36.6
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.1e-39 166.4 317 35.0
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 5.3e-39 165.6 280 37.9
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 5.3e-39 165.6 317 36.9
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 6.9e-39 165.2 292 38.4
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.2e-38 164.5 289 38.1
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.5e-38 164.1 288 40.3
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-38 164.1 297 35.7
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.9e-37 159.8 245 44.1
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 3.2e-36 156.4 286 38.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 4.2e-36 156.0 272 35.7
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 4.2e-36 156.0 295 35.6
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.5e-36 155.6 285 37.5
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 4.6e-35 152.5 272 35.7
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.0e-34 151.4 317 36.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 6.7e-34 148.7 276 37.7
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.5e-33 147.5 217 40.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.5e-33 147.5 316 34.8
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 5.7e-33 145.6 278 37.1
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 9.7e-33 144.8 311 36.0
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.3e-32 144.4 291 36.1
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.8e-32 143.3 289 35.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.8e-32 142.5 243 38.3
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.1e-31 141.4 270 37.0
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.8e-31 140.6 264 36.0
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.8e-31 140.6 264 36.0
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.6e-30 136.7 298 34.6
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.6e-30 136.7 298 34.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 3.4e-30 136.3 287 34.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.0e-29 134.8 284 36.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 3.8e-29 132.9 309 36.9
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.1e-28 131.3 234 38.9
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 8.8e-26 121.7 285 31.9
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.0e-25 120.6 251 34.7
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 7.4e-25 118.6 189 36.0
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 9.7e-25 118.2 238 34.0
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 9.7e-25 118.2 69 84.1
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 9.7e-25 118.2 69 84.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.7e-24 117.5 297 34.7
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 2.2e-24 117.1 238 31.9
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.8e-24 116.7 239 33.5
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 6.3e-24 115.5 299 30.1
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.4e-23 114.4 284 30.3
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 3.1e-23 113.2 260 33.1
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.1e-23 112.8 325 30.5
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 9.1e-23 111.7 273 29.3
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-22 111.3 65 83.1
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.2e-22 111.3 65 83.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-22 111.3 272 34.9
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.5e-22 110.9 314 30.3
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.9e-21 106.7 303 30.0
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.0e-21 105.9 107 46.7
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 3.2e-20 103.2 264 31.4
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.7e-19 99.4 96 50.0
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.4e-18 97.8 145 39.3
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.4e-18 97.8 262 30.9
BcaC02g12160 Brassica carinata HOM05D001925 ORTHO05D004257 6.7e-18 95.5 120 50.8
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 6.7e-18 95.5 368 25.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 4.8e-16 89.4 186 40.9
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 4.8e-16 89.4 269 28.3
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.1e-15 88.2 237 32.5
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 4.5e-14 82.8 184 30.4
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.0e-13 81.6 224 26.8
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.2e-13 80.5 255 27.5
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 5.0e-13 79.3 211 30.3
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 6.5e-13 79.0 211 30.3
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.3e-09 66.6 86 38.4
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.7e-09 65.9 86 38.4
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.3e-08 62.4 115 31.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.8e-07 60.8 89 38.2


User provided reference genes

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