Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 8.3e-160 567.0 291 100.0
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 8.7e-141 503.8 278 93.5
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.1e-139 499.2 296 89.9
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 8.4e-136 487.3 291 90.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.1e-135 486.9 291 88.7
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.1e-135 486.9 291 88.7
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 2.4e-135 485.7 291 88.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.3e-131 473.4 292 87.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 2.1e-131 472.6 293 86.7
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 3.1e-130 468.8 294 86.7
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 3.4e-129 465.3 292 86.0
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.8e-129 464.5 292 85.6
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 7.6e-129 464.2 297 86.2
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.9e-128 462.2 295 86.1
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.0e-125 452.2 292 83.9
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 9.0e-122 440.7 298 80.2
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.5e-116 422.5 298 77.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.3e-115 420.2 265 86.0
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.8e-115 418.3 296 76.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.8e-115 418.3 295 76.3
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.1e-110 402.9 219 92.2
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.1e-110 402.9 301 73.8
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.3e-108 395.2 295 76.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 3.9e-101 372.1 291 72.2
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 5.1e-101 371.7 291 71.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.0e-100 369.8 291 70.1
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.4e-100 368.6 291 70.1
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 7.0e-98 361.3 207 87.9
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 7.0e-98 361.3 292 71.6
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.0e-98 361.3 292 71.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 7.0e-98 361.3 291 70.1
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.6e-97 359.4 292 71.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 4.5e-97 358.6 297 70.4
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 5.9e-97 358.2 294 68.7
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.3e-96 357.1 290 70.3
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.1e-95 354.0 300 67.0
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.1e-95 354.0 291 70.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-95 353.6 292 71.2
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.9e-95 353.2 266 72.2
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 2.5e-95 352.8 296 68.2
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 2.5e-95 352.8 292 68.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.5e-95 352.8 295 66.4
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 9.4e-95 350.9 213 85.0
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.2e-94 350.5 213 83.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.6e-94 350.1 291 67.7
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.1e-94 349.7 291 68.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.6e-94 349.0 299 66.2
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.6e-94 349.0 213 84.5
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.6e-94 349.0 302 67.2
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.1e-94 348.2 213 82.2
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.8e-93 346.7 308 64.9
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.8e-93 346.7 280 69.3
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 2.3e-93 346.3 243 74.5
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.3e-93 346.3 192 89.6
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.2e-93 345.1 289 67.5
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 8.8e-93 344.4 266 71.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 8.8e-93 344.4 297 67.7
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.1e-92 344.0 293 66.6
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.6e-92 342.8 217 81.1
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 5.7e-92 341.7 196 87.8
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 5.7e-92 341.7 207 84.1
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 7.4e-92 341.3 213 81.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 9.7e-92 340.9 194 88.1
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.7e-91 340.1 290 66.6
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.2e-91 339.7 213 82.6
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.8e-91 339.3 192 88.5
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.8e-91 339.3 192 88.5
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 3.7e-91 339.0 194 87.6
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.8e-91 338.6 213 82.2
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 6.3e-91 338.2 255 71.0
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 6.3e-91 338.2 192 87.5
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 6.3e-91 338.2 209 82.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 8.2e-91 337.8 195 87.7
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 8.2e-91 337.8 303 66.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.1e-90 337.4 272 69.1
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.8e-90 336.7 212 80.7
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.8e-90 336.7 213 81.2
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 3.1e-90 335.9 192 87.5
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 4.1e-90 335.5 194 87.1
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 7.0e-90 334.7 298 65.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 9.1e-90 334.3 288 67.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.2e-89 334.0 299 61.9
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.2e-89 334.0 197 83.8
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 1.6e-89 333.6 290 67.2
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.6e-89 333.6 288 66.7
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 3.5e-89 332.4 263 69.6
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 4.5e-89 332.0 295 64.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.0e-88 330.9 296 65.5
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.0e-88 330.9 296 65.5
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.0e-88 330.9 192 85.4
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.3e-88 330.5 184 89.7
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.2e-88 329.7 192 85.4
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.1e-87 327.4 286 63.6
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.5e-87 327.0 284 67.6
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.5e-87 327.0 198 84.8
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.9e-87 326.6 220 77.7
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.9e-87 326.6 213 78.9
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 3.2e-87 325.9 208 82.2
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.1e-86 323.2 303 64.4
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.7e-86 322.8 272 66.9
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 2.7e-86 322.8 190 84.2
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.1e-86 321.6 192 84.4
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 8.0e-86 321.2 215 76.7
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 5.2e-85 318.5 262 65.6
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 6.7e-85 318.2 223 75.8
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 5.3e-82 308.5 187 83.4
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.7e-81 306.2 184 82.1
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.7e-80 303.5 184 82.6
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.8e-80 302.4 255 66.3
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 8.8e-77 291.2 303 60.1
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 9.8e-76 287.7 343 50.1
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.8e-75 285.4 204 74.5
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.8e-74 283.5 157 89.8
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.6e-73 280.4 249 65.9
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.3e-72 276.6 245 63.7
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 8.9e-69 264.6 260 61.2
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.0e-68 263.5 191 72.3
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.2e-67 260.0 246 63.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.8e-65 251.5 160 76.2
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 2.3e-64 250.0 134 93.3
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 5.0e-64 248.8 149 85.9
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.0e-64 248.8 254 59.8
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.4e-61 240.7 193 63.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 9.8e-60 234.6 191 70.2
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.3e-59 234.2 160 70.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 6.0e-57 225.3 213 60.1
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 8.0e-54 214.9 128 85.9
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 2.5e-47 193.4 250 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.3e-45 186.8 181 58.6
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-39 167.2 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.8e-38 163.3 89 89.9
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.5e-31 140.2 166 50.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.6e-31 139.0 160 48.8
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.9e-27 125.9 174 46.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.7e-24 117.5 78 71.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.1e-23 114.8 173 46.2
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.3e-23 112.8 78 69.2
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.6e-17 94.4 77 66.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.1e-16 89.4 150 38.7
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 2.1e-06 57.4 68 48.5
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 4.8e-06 56.2 141 35.5


User provided reference genes

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