Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 7.7e-211 736.9 368 100.0
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.7e-184 647.9 371 89.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 3.5e-179 631.7 373 86.6
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.3e-178 629.0 370 86.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.6e-176 622.9 368 86.1
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 2.8e-176 622.1 370 87.6
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.1e-175 620.2 370 87.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 3.1e-175 618.6 372 87.1
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.0e-175 618.2 370 86.8
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 8.9e-175 617.1 370 86.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.2e-174 616.7 372 86.8
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 2.6e-174 615.5 370 86.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 7.5e-174 614.0 373 86.1
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 8.3e-173 610.5 372 86.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.3e-167 592.4 380 84.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 3.4e-166 588.6 370 82.7
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.8e-166 587.8 373 82.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.9e-162 575.1 349 85.7
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 6.9e-127 458.0 293 82.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.9e-125 451.8 376 63.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 5.5e-124 448.4 375 62.7
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.5e-123 445.7 371 63.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.8e-122 443.4 369 62.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.3e-122 443.0 375 62.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 3.9e-122 442.2 374 61.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 4.3e-121 438.7 373 62.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.2e-120 436.4 376 62.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.8e-120 436.0 375 61.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 6.3e-120 434.9 376 61.7
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 6.3e-120 434.9 379 61.7
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.4e-119 433.0 374 59.4
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.1e-119 432.2 381 59.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 9.0e-119 431.0 376 60.1
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 9.0e-119 431.0 375 60.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.2e-118 430.6 376 61.2
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-118 429.5 379 62.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.6e-118 429.5 378 61.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.6e-118 429.5 337 66.8
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.4e-118 429.1 377 60.7
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 4.5e-118 428.7 377 60.2
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 7.6e-118 427.9 371 59.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 7.6e-118 427.9 378 60.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.3e-117 427.2 376 59.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.7e-117 426.8 373 59.0
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.9e-117 426.0 371 59.0
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.1e-116 424.1 376 59.6
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.4e-116 423.7 372 60.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.1e-115 419.9 371 59.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.7e-115 419.5 376 59.3
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.8e-114 416.8 372 58.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.3e-114 416.4 374 57.2
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.9e-114 415.6 370 58.1
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.5e-113 412.9 376 58.8
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 4.3e-113 412.1 376 58.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.2e-112 409.8 371 60.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.7e-112 409.1 374 56.7
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 6.3e-112 408.3 371 57.1
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.4e-111 406.4 375 58.4
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.4e-111 406.4 376 57.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.4e-111 406.4 373 56.8
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.1e-111 406.0 375 57.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.1e-111 404.4 373 58.2
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.1e-111 404.4 373 58.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 5.9e-110 401.7 375 56.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 5.9e-110 401.7 368 57.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 7.7e-110 401.4 371 59.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.7e-109 400.2 378 57.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.7e-109 400.2 377 57.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.2e-109 399.8 377 57.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 2.2e-109 399.8 369 56.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 5.0e-109 398.7 367 57.8
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.4e-108 397.1 375 56.5
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.5e-108 396.4 371 56.9
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 7.2e-108 394.8 375 56.8
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-107 393.7 373 56.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.6e-107 393.7 379 56.5
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 4.7e-107 392.1 373 56.3
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.4e-106 390.6 417 51.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.8e-106 390.2 374 55.9
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 5.1e-106 388.7 375 54.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.0e-105 386.7 375 55.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.2e-104 383.3 370 56.2
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.4e-103 379.8 349 58.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 7.0e-103 378.3 403 52.6
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.0e-102 376.7 374 54.5
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 4.5e-102 375.6 355 56.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 1.7e-101 373.6 351 58.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.2e-101 373.2 361 56.5
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.2e-101 373.2 374 54.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.8e-101 372.5 376 55.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 8.5e-101 371.3 352 56.0
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 2.5e-100 369.8 350 55.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 5.5e-100 368.6 366 54.6
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 7.2e-100 368.2 380 54.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.6e-99 367.1 345 58.6
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.6e-99 367.1 374 54.0
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 3.3e-97 359.4 352 54.5
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.7e-97 358.6 325 55.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.7e-96 355.9 376 51.1
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 3.7e-96 355.9 376 53.5
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 8.2e-96 354.8 376 50.3
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.8e-95 353.6 388 51.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.4e-95 353.2 335 57.0
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.4e-95 353.2 375 51.2
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.1e-95 352.8 376 50.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.3e-95 352.1 371 54.4
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.3e-93 347.4 347 53.9
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.9e-93 346.3 333 56.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 7.2e-92 341.7 379 50.1
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.1e-91 340.1 399 48.9
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.0e-90 336.3 377 50.1
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 9.7e-89 331.3 368 51.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.3e-88 330.9 298 58.7
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.7e-88 330.5 353 51.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.2e-88 330.1 373 49.3
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 4.1e-87 325.9 330 56.1
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 5.3e-87 325.5 328 54.9
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 5.9e-86 322.0 385 47.3
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.2e-84 316.2 341 53.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.7e-81 305.4 302 55.3
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-75 287.3 382 42.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.0e-73 280.4 376 46.0
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.6e-70 270.8 481 37.4
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 5.0e-69 265.8 343 44.9
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.1e-67 260.4 386 39.9
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.8e-67 260.0 245 55.1
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.0e-66 258.1 414 38.6
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.1e-66 256.5 303 49.5
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 9.8e-65 251.5 386 39.4
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.4e-63 246.9 237 58.2
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.5e-60 237.7 280 51.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.8e-59 233.4 294 50.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.3e-53 214.5 258 49.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.0e-53 213.4 243 50.6
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.8e-51 206.8 339 36.9
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.1e-51 205.3 384 34.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.5e-49 198.7 195 50.8
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.1e-47 192.2 267 44.9
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.8e-46 188.7 255 47.1
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.0e-45 188.3 211 49.3
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.5e-44 183.7 228 47.4
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.6e-43 181.0 158 57.6
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.7e-37 158.7 140 57.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.9e-36 157.5 150 62.0
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.1e-35 152.1 117 65.8
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.9e-24 117.1 73 69.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.4e-23 114.8 121 51.2
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 3.0e-21 107.1 428 25.0
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 2.5e-20 104.0 179 36.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 9.9e-17 92.0 57 78.9
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 4.8e-11 73.2 74 51.4
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.1e-10 72.0 42 78.6
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 7.6e-09 65.9 51 62.7


User provided reference genes

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