Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 9.2e-215 750.0 386 100.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 3.7e-179 631.7 386 82.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.9e-173 611.7 384 81.8
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.5e-167 592.4 382 80.6
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 9.4e-159 563.9 387 78.0
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 6.1e-158 561.2 387 77.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.3e-157 559.3 388 77.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.3e-157 559.3 406 73.4
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.5e-156 556.6 383 75.2
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.6e-156 555.8 388 77.3
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.4e-156 554.3 388 77.1
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.5e-148 530.0 342 80.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.2e-142 510.4 393 69.5
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 2.4e-130 469.5 378 65.9
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.8e-108 395.2 403 54.6
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 5.8e-108 395.2 403 54.6
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.2e-107 393.3 403 55.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.9e-106 390.2 402 53.7
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.4e-106 388.7 391 56.0
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.7e-104 383.6 401 54.1
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.3e-104 383.3 408 51.7
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.5e-103 379.8 413 53.5
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.3e-103 379.0 403 54.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 7.3e-103 378.3 412 53.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-102 377.1 412 53.2
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.8e-101 373.6 407 54.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 4.0e-101 372.5 409 51.8
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 5.2e-101 372.1 407 51.8
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.6e-100 369.8 408 52.7
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 5.8e-100 368.6 408 53.4
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 7.5e-100 368.2 407 52.3
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.2e-99 366.7 390 53.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.7e-99 365.9 412 51.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.4e-98 364.0 411 51.3
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.9e-98 363.6 405 51.1
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.9e-98 363.6 417 52.0
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.9e-98 363.6 398 53.8
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 5.4e-98 362.1 403 52.9
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 3.5e-97 359.4 405 50.9
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.3e-96 356.7 391 52.7
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.9e-96 355.9 403 50.4
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 8.6e-96 354.8 407 51.1
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.9e-95 353.6 405 50.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 3.3e-95 352.8 390 50.3
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.6e-94 350.5 407 50.6
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.8e-94 349.7 394 51.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.8e-94 349.7 407 50.1
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 6.2e-94 348.6 408 49.8
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.4e-93 347.4 404 50.7
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.4e-93 347.4 451 47.0
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 1.8e-93 347.1 400 50.2
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 2.4e-93 346.7 402 50.2
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 5.2e-93 345.5 397 51.4
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 5.2e-93 345.5 403 50.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.9e-93 344.7 394 50.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 2.6e-92 343.2 415 48.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.8e-91 339.3 394 50.0
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 4.9e-91 339.0 391 51.4
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.4e-90 336.7 404 50.5
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 4.1e-90 335.9 411 49.1
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 9.2e-90 334.7 396 50.8
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.2e-89 334.3 396 48.7
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.7e-89 333.2 397 49.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.7e-89 333.2 417 48.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.5e-89 332.8 407 48.4
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-88 331.3 400 49.5
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.0e-88 331.3 405 49.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.3e-88 330.9 403 49.4
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.7e-88 330.5 371 52.3
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.0e-88 329.7 405 47.7
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.6e-88 328.6 420 48.3
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.9e-87 327.0 413 47.9
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.2e-86 324.3 404 47.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.1e-86 323.6 325 55.1
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.1e-86 323.6 374 49.5
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.8e-86 323.2 371 51.2
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 2.8e-86 323.2 405 49.1
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.6e-86 322.8 386 50.5
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 4.7e-86 322.4 409 46.7
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 6.2e-86 322.0 396 48.0
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 6.2e-86 322.0 351 53.3
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.1e-85 321.2 414 47.3
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-85 321.2 374 49.2
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.4e-85 320.9 429 44.5
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.0e-85 319.3 394 49.0
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 6.9e-85 318.5 414 46.9
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.0e-84 317.0 366 50.8
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 3.4e-84 316.2 436 43.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.4e-84 316.2 382 48.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 4.4e-84 315.8 410 47.3
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.7e-83 313.9 413 46.7
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 8.4e-83 311.6 397 47.4
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 9.3e-82 308.1 353 53.0
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.5e-81 306.2 384 47.1
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 4.6e-81 305.8 392 47.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 6.0e-81 305.4 375 46.9
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-80 303.9 446 42.2
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.9e-79 300.4 358 50.8
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.3e-78 297.7 412 45.6
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.4e-77 293.5 498 39.0
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 8.4e-75 285.0 408 41.4
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 8.7e-72 275.0 402 44.0
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.5e-71 274.2 437 39.8
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.6e-71 272.3 498 38.2
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 2.3e-64 250.4 405 42.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 6.2e-62 242.3 376 42.8
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 6.9e-61 238.8 387 41.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.2e-59 233.8 318 46.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 5.3e-53 212.6 290 46.2
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-52 211.5 229 52.4
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.2e-51 207.2 277 44.4
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.2e-50 203.0 320 41.2
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 6.7e-48 195.7 243 47.3
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 8.8e-48 195.3 358 39.9
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 4.5e-44 183.0 326 37.1
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 5.9e-44 182.6 322 40.1
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 5.5e-42 176.0 226 48.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.4e-37 160.6 335 35.5
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.9e-35 153.7 415 30.8
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.5e-28 129.8 163 47.2
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.5e-28 129.8 325 32.6
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 7.7e-28 129.0 146 50.0
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 7.7e-28 129.0 146 50.0
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 6.5e-27 125.9 130 48.5
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.1e-21 108.6 141 45.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.8e-19 100.1 142 44.4
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.2e-18 96.7 116 47.4
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 2.1e-17 94.4 287 28.2
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.1e-17 94.4 98 61.2
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.0e-16 92.0 47 85.1
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.4e-16 91.7 52 73.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.5e-15 88.2 139 43.9
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.4e-13 79.7 65 70.8
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.5e-10 70.9 65 58.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.2e-10 69.3 103 42.7
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 5.2e-08 63.2 118 33.9


User provided reference genes

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