Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 0.0e+00 1176.4 629 100.0
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.2e-259 899.8 646 77.4
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 1.2e-251 873.2 642 76.6
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 1.4e-249 866.3 641 77.2
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 4.5e-243 844.7 641 74.1
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 1.6e-219 766.5 640 71.7
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.4e-175 620.5 626 64.7
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 3.6e-168 595.9 627 64.1
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 2.4e-159 566.6 631 61.6
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 8.9e-159 564.7 629 62.5
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 2.0e-142 510.4 632 58.4
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 7.9e-131 471.9 688 48.5
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 9.3e-124 448.4 687 47.3
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 1.6e-67 261.5 705 34.2
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 7.0e-63 246.1 706 34.3
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 2.8e-59 234.2 710 33.1
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 6.2e-59 233.0 684 34.6
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 8.1e-59 232.6 698 34.7
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 8.1e-59 232.6 703 33.1
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 1.2e-57 228.8 646 34.4
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 4.4e-57 226.9 644 33.9
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.7e-56 224.9 717 33.9
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 3.2e-55 220.7 665 34.9
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 9.2e-55 219.2 716 33.8
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 7.8e-54 216.1 704 32.2
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 7.8e-54 216.1 496 36.9
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 1.3e-53 215.3 707 33.2
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 1.6e-51 208.4 633 33.6
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 8.1e-51 206.1 693 31.5
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 1.1e-50 205.7 594 33.7
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 1.4e-50 205.3 670 33.9
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 2.6e-49 201.1 670 32.7
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 7.6e-49 199.5 430 37.7
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.3e-48 198.7 695 31.2
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.3e-48 198.7 695 31.2
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 1.4e-47 195.3 434 38.2
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 1.4e-47 195.3 656 32.0
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 7.1e-47 193.0 659 31.7
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.6e-46 191.8 634 34.2
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.5e-46 190.7 653 31.5
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 5.6e-44 183.3 624 32.2
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 7.3e-44 183.0 484 35.5
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 1.2e-43 182.2 675 30.8
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 3.1e-42 177.6 702 31.9
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 4.0e-42 177.2 485 34.2
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 4.0e-42 177.2 671 30.4
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 5.2e-42 176.8 659 31.3
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 9.0e-42 176.0 583 31.2
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 1.3e-40 172.2 689 31.1
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.2e-40 171.4 671 31.1
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 5.4e-39 166.8 684 29.8
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 5.4e-39 166.8 473 34.5
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 7.1e-39 166.4 644 30.6
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 7.1e-39 166.4 692 30.3
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 1.2e-38 165.6 656 30.8
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 3.5e-38 164.1 668 30.1
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 2.3e-37 161.4 660 29.8
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 3.0e-37 161.0 677 30.3
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 6.6e-37 159.8 710 28.9
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 3.3e-36 157.5 534 32.2
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 2.1e-35 154.8 679 29.3
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 2.8e-35 154.5 659 29.9
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 1.1e-34 152.5 454 32.8
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.4e-34 152.1 501 32.1
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.8e-34 151.8 651 29.2
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 2.4e-34 151.4 688 29.4
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 4.0e-34 150.6 651 28.6
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 6.9e-34 149.8 597 29.0
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 2.6e-33 147.9 649 30.7
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 9.9e-33 146.0 653 30.0
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 9.9e-33 146.0 585 31.5
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.1e-31 142.5 604 29.8
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 4.2e-31 140.6 604 30.0
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 9.3e-31 139.4 573 31.2
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.3e-29 134.8 469 32.0
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.3e-29 134.8 575 29.0
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 3.9e-29 134.0 648 29.2
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 8.7e-29 132.9 569 28.6
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 4.3e-28 130.6 709 29.2
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 5.6e-28 130.2 397 34.8
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 2.1e-27 128.3 651 28.1
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 8.1e-27 126.3 334 34.1
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 2.4e-26 124.8 463 30.0
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 2.4e-26 124.8 455 29.2
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 4.0e-26 124.0 580 29.0
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 2.6e-25 121.3 611 28.0
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 4.5e-25 120.6 555 28.5
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 3.8e-24 117.5 454 29.7
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.0e-21 109.4 492 29.3
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 3.9e-21 107.5 587 29.0
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 1.9e-20 105.1 552 28.6
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 2.4e-18 98.2 528 27.3
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.5e-17 95.5 121 42.1
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 1.5e-17 95.5 619 28.6
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 4.5e-17 94.0 476 27.9
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 8.4e-16 89.7 224 34.4
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 9.3e-15 86.3 376 30.3
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 8.7e-13 79.7 441 25.6
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 2.8e-11 74.7 175 34.3
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 3.7e-11 74.3 324 29.9
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 2.6e-09 68.2 454 25.8
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 1.0e-08 66.2 295 30.8
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 1.9e-07 62.0 312 26.6
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 9.4e-07 59.7 179 34.6
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 4.6e-06 57.4 219 26.5


User provided reference genes

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