Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001357m.g Eutrema salsugineum HOM05D006867 ORTHO05D008676 0.0e+00 1149.0 634 100.0
Sp4g28920 Schrenkiella parvula HOM05D006867 ORTHO05D008676 2.1e-296 1021.9 636 85.5
AL4G46360 Arabidopsis lyrata HOM05D006867 ORTHO05D008676 1.1e-270 936.4 644 80.6
Carub.0004s2962 Capsella rubella HOM05D006867 ORTHO05D008676 4.2e-265 917.9 640 80.9
AT2G46900 Arabidopsis thaliana HOM05D006867 ORTHO05D008676 1.8e-260 902.5 643 76.8
Aa31LG1G28260 Aethionema arabicum HOM05D006867 ORTHO05D008676 1.1e-257 893.3 643 77.1
CARHR142250 Cardamine hirsuta HOM05D006867 ORTHO05D008676 3.1e-252 875.2 632 79.1
BolC4t21761H Brassica oleracea HOM05D006867 ORTHO05D008676 1.4e-247 859.8 647 76.0
A05p00940 Brassica napus HOM05D006867 ORTHO05D008676 1.5e-246 856.3 643 76.5
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.9e-241 839.3 626 77.6
THA.LOC104817409 Tarenaya hassleriana HOM05D006867 ORTHO05D008676 3.5e-219 765.4 644 65.4
BcaC02g12633 Brassica carinata HOM05D006867 ORTHO05D008676 6.1e-216 754.6 640 71.6
COL.COLO4_23081 Corchorus olitorius HOM05D006867 ORTHO05D008676 2.3e-202 709.5 635 63.0
Thecc.01G329400 Theobroma cacao HOM05D006867 ORTHO05D008676 1.5e-201 706.8 649 60.9
Ciclev10019260m.g Citrus clementina HOM05D006867 ORTHO05D008676 4.7e-200 701.8 643 61.4
Atru.chr5.813 Acer truncatum HOM05D006867 ORTHO05D008676 4.4e-198 695.3 602 62.5
Gorai.008G133000 Gossypium raimondii HOM05D006867 ORTHO05D008676 1.9e-196 689.9 633 61.8
Gohir.A12G118400 Gossypium hirsutum HOM05D006867 ORTHO05D008676 7.1e-196 688.0 633 61.0
Gohir.D12G122200 Gossypium hirsutum HOM05D006867 ORTHO05D008676 1.2e-195 687.2 633 60.8
Manes.01G237400 Manihot esculenta HOM05D006867 ORTHO05D008676 2.3e-194 682.9 641 61.8
Potri.002G183500 Populus trichocarpa HOM05D006867 ORTHO05D008676 1.5e-190 670.2 634 60.6
CiPaw.02G046400 Carya illinoinensis HOM05D006867 ORTHO05D008676 2.9e-189 666.0 651 59.4
QL08p048171 Quercus lobata HOM05D006867 ORTHO05D008676 5.4e-188 661.8 603 60.0
Sabra14G0080800 Salix brachista HOM05D006867 ORTHO05D008676 2.1e-187 659.8 629 60.1
GSVIVG01027485001 Vitis vinifera HOM05D006867 ORTHO05D008676 1.7e-186 656.8 535 63.2
Potri.014G109500 Populus trichocarpa HOM05D006867 ORTHO05D008676 2.5e-185 652.9 633 57.8
Sabra02G0132100 Salix brachista HOM05D006867 ORTHO05D008676 2.5e-185 652.9 638 58.9
CANSAT56G0208 Cannabis sativa HOM05D006867 ORTHO05D008676 9.6e-185 651.0 650 57.2
Haze_15774 Corylus avellana HOM05D006867 ORTHO05D008676 1.4e-183 647.1 638 57.7
CANSAT56G2490 Cannabis sativa HOM05D006867 ORTHO05D008676 2.4e-183 646.4 650 56.9
Cc00_g15760 Coffea canephora HOM05D006867 ORTHO05D008676 3.1e-183 646.0 657 56.3
Cfa003709 Carpinus fangiana HOM05D006867 ORTHO05D008676 3.4e-182 642.5 638 60.5
Actinidia08011 Actinidia chinensis HOM05D006867 ORTHO05D008676 7.6e-182 641.3 651 55.5
arahy.Tifrunner.gnm1.ann1.L7530T Arachis hypogaea HOM05D006867 ORTHO05D008676 2.9e-181 639.4 668 55.1
arahy.Tifrunner.gnm1.ann1.Y7T28V Arachis hypogaea HOM05D006867 ORTHO05D008676 3.8e-181 639.0 668 55.1
Lalb_Chr10g0101011 Lupinus albus HOM05D006867 ORTHO05D008676 6.4e-181 638.3 648 55.9
Dinv32661 Davidia involucrata HOM05D006867 ORTHO05D008676 4.2e-180 635.6 600 57.8
Lalb_Chr17g0343131 Lupinus albus HOM05D006867 ORTHO05D008676 7.1e-180 634.8 658 55.9
Lj9A610G56 Lonicera japonica HOM05D006867 ORTHO05D008676 3.5e-179 632.5 663 54.8
Phvul.010G121700 Phaseolus vulgaris HOM05D006867 ORTHO05D008676 6.0e-179 631.7 650 55.8
MD01G1098500 Malus domestica HOM05D006867 ORTHO05D008676 7.8e-179 631.3 629 58.7
MD07G1165200 Malus domestica HOM05D006867 ORTHO05D008676 3.9e-178 629.0 647 56.9
Glyma.16G015800 Glycine max HOM05D006867 ORTHO05D008676 5.1e-178 628.6 645 56.1
Prupe.2G203900 Prunus persica HOM05D006867 ORTHO05D008676 1.5e-177 627.1 631 56.4
VMungo0331G1883 Vigna mungo HOM05D006867 ORTHO05D008676 2.5e-177 626.3 647 56.9
Lj3g0022605 Lotus japonicus HOM05D006867 ORTHO05D008676 7.3e-177 624.8 642 55.0
Glyma.07G047300 Glycine max HOM05D006867 ORTHO05D008676 1.6e-176 623.6 646 55.1
TAR629G2918 Trochodendron aralioides HOM05D006867 ORTHO05D008676 1.8e-175 620.2 647 54.9
Ca_23461_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.2e-174 617.5 647 54.4
Ca_23474_v3 Cicer arietinum L. HOM05D006867 ORTHO05D008676 1.2e-174 617.5 647 54.4
Psat0s2980g0160 Pisum sativum HOM05D006867 ORTHO05D008676 3.4e-174 615.9 650 53.5
MBI11_g13783_MAGBIO Magnolia biondii HOM05D006867 ORTHO05D008676 9.9e-174 614.4 643 53.5
EL10Ac9g22256 Beta vulgaris HOM05D006867 ORTHO05D008676 4.9e-173 612.1 641 53.5
FAN06G0390 Fragaria x ananassa HOM05D006867 ORTHO05D008676 8.4e-173 611.3 641 53.7
FvH4_7g18270 Fragaria vesca HOM05D006867 ORTHO05D008676 9.3e-172 607.8 641 54.1
Nitab4.5_0004754g0040 Nicotiana tabacum HOM05D006867 ORTHO05D008676 1.6e-171 607.1 645 51.5
FAN06G3784 Fragaria x ananassa HOM05D006867 ORTHO05D008676 2.7e-171 606.3 641 54.1
Nitab4.5_0000348g0180 Nicotiana tabacum HOM05D006867 ORTHO05D008676 2.7e-171 606.3 662 50.3
Oeu032684.1 Olea europaea HOM05D006867 ORTHO05D008676 4.6e-171 605.5 659 51.7
TPR.G32787 Trifolium pratense HOM05D006867 ORTHO05D008676 6.0e-171 605.1 646 52.9
Eucgr.L00743 Eucalyptus grandis HOM05D006867 ORTHO05D008676 1.0e-170 604.4 647 54.7
Medtr8g023750 Medicago truncatula HOM05D006867 ORTHO05D008676 1.0e-170 604.4 646 53.9
RcHm_v2.0_Chr1g0361851 Rosa chinensis HOM05D006867 ORTHO05D008676 3.0e-170 602.8 648 55.6
FAN10G4369 Fragaria x ananassa HOM05D006867 ORTHO05D008676 5.1e-170 602.1 644 54.5
Sed0008932 Sechium edule HOM05D006867 ORTHO05D008676 8.7e-170 601.3 632 53.2
Sc08g0001320 Simmondsia chinensis HOM05D006867 ORTHO05D008676 2.5e-169 599.7 641 52.9
Hund00158 Selenicereus undatus HOM05D006867 ORTHO05D008676 4.3e-169 599.0 493 61.9
Sopen08g006420 Solanum pennellii HOM05D006867 ORTHO05D008676 4.3e-169 599.0 475 61.1
vmacro08516 Vaccinium macrocarpon HOM05D006867 ORTHO05D008676 5.6e-169 598.6 532 57.9
Ah.01g010880 Amaranthus hybridus HOM05D006867 ORTHO05D008676 7.4e-169 598.2 644 51.9
AUR62039056 Chenopodium quinoa HOM05D006867 ORTHO05D008676 2.8e-168 596.3 644 51.9
HanXRQChr15g0480381 Helianthus annuus HOM05D006867 ORTHO05D008676 3.7e-168 595.9 621 54.3
CAN.G90.6 Capsicum annuum HOM05D006867 ORTHO05D008676 1.1e-167 594.3 645 52.2
AUR62010330 Chenopodium quinoa HOM05D006867 ORTHO05D008676 3.1e-167 592.8 645 53.8
Aqoxy5G04385 Aquilegia oxysepala HOM05D006867 ORTHO05D008676 5.3e-167 592.0 651 53.0
FAN01G1143 Fragaria x ananassa HOM05D006867 ORTHO05D008676 9.0e-167 591.3 596 54.0
FAN03G0961 Fragaria x ananassa HOM05D006867 ORTHO05D008676 9.0e-167 591.3 596 54.0
FAN10G3600 Fragaria x ananassa HOM05D006867 ORTHO05D008676 1.2e-166 590.9 645 53.8
MSTRG.10869 Avicennia marina HOM05D006867 ORTHO05D008676 1.5e-166 590.5 490 60.2
ATR0824G236 Amborella trichopoda HOM05D006867 ORTHO05D008676 3.4e-166 589.3 647 50.5
Migut.I01214 Erythranthe guttata HOM05D006867 ORTHO05D008676 1.1e-164 584.3 653 49.3
CsaV3_3G007140 Cucumis sativus L. HOM05D006867 ORTHO05D008676 2.5e-164 583.2 646 50.9
Lsat_1_v5_gn_3_39660 Lactuca sativa HOM05D006867 ORTHO05D008676 4.2e-164 582.4 666 50.8
ClCG05G000080 Citrullus lanatus HOM05D006867 ORTHO05D008676 6.0e-163 578.6 509 56.8
PSO782G1247 Papaver somniferum HOM05D006867 ORTHO05D008676 1.3e-162 577.4 658 51.5
Rhsim04G0175800 Rhododendron simsii HOM05D006867 ORTHO05D008676 3.0e-162 576.2 593 53.5
SGA_v2.0_scaffold122G33256 Striga asiatica HOM05D006867 ORTHO05D008676 6.7e-162 575.1 529 56.0
TWI59G0124 Tripterygium wilfordii HOM05D006867 ORTHO05D008676 8.7e-162 574.7 645 52.6
HanXRQChr17g0542101 Helianthus annuus HOM05D006867 ORTHO05D008676 2.5e-161 573.2 511 56.0
SalBow6G1414 Salvia bowleyana HOM05D006867 ORTHO05D008676 2.1e-160 570.1 664 48.3
Hma1.2p1_0074F.1_g039020 Hydrangea macrophylla HOM05D006867 ORTHO05D008676 2.8e-160 569.7 427 65.3
HPP92_013529 Vanilla planifolia HOM05D006867 ORTHO05D008676 4.6e-155 552.4 628 48.2
FAN01G0521 Fragaria x ananassa HOM05D006867 ORTHO05D008676 8.2e-152 541.6 475 57.3
ECA246G2438 Erigeron canadensis HOM05D006867 ORTHO05D008676 3.8e-149 532.7 626 50.6
CSS0030251 Camellia sinensis var. sinensis HOM05D006867 ORTHO05D008676 5.0e-149 532.3 558 56.1
Zm00001eb102740 Zea mays HOM05D006867 ORTHO05D008676 7.9e-147 525.0 647 47.0
Os09g0514900 Oryza sativa ssp. japonica HOM05D006867 ORTHO05D008676 1.0e-146 524.6 644 47.8
DCAR_022120 Daucus carota HOM05D006867 ORTHO05D008676 1.3e-141 507.7 624 47.0
Peaxi162Scf01205g00180 Petunia axillaris HOM05D006867 ORTHO05D008676 6.7e-138 495.4 391 60.1
Cpa.g.sc1043.2 Carica papaya HOM05D006867 ORTHO05D008676 1.1e-132 478.0 355 66.2
Pp3c1_12740 Physcomitrium patens HOM05D006867 ORTHO05D008676 4.5e-118 429.5 525 44.0
SMO331G0055 Selaginella moellendorffii HOM05D006867 ORTHO05D008676 3.6e-115 419.9 469 46.7
MELO3C005936.2 Cucumis melo HOM05D006867 ORTHO05D008676 1.2e-113 414.8 341 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4360 Anthoceros agrestis HOM05D006867 ORTHO05D008676 7.7e-110 402.1 528 42.6
Pp3c11_2510 Physcomitrium patens HOM05D006867 ORTHO05D008676 3.8e-109 399.8 483 44.7
CDE09G1372 Ceratophyllum demersum HOM05D006867 ORTHO05D008676 4.2e-108 396.4 481 45.7
Mapoly0002s0219 Marchantia polymorpha HOM05D006867 ORTHO05D008676 5.2e-106 389.4 503 42.1
CBR_g36359 Chara braunii HOM05D006867 ORTHO05D008676 6.6e-77 292.7 668 31.3
Cre11.g467639 Chlamydomonas reinhardtii HOM05D006867 ORTHO05D008676 2.5e-76 290.8 531 36.2
PRCOL_00004033 Prasinoderma coloniale HOM05D006867 ORTHO05D008676 3.6e-59 233.8 471 32.7
MCO10G037 Micromonas commoda HOM05D006867 ORTHO05D008676 5.3e-50 203.4 562 27.0
C04p72500 Brassica napus HOM05D006867 ORTHO05D008676 1.8e-37 161.8 100 79.0
BolC4t28738H Brassica oleracea HOM05D006867 ORTHO05D008676 1.8e-37 161.8 100 79.0
A04p34720 Brassica napus HOM05D006867 ORTHO05D008676 4.8e-35 153.7 98 77.6
Solyc08g016090.4 Solanum lycopersicum HOM05D006867 ORTHO05D008676 1.4e-34 152.1 415 26.7
Cfa022788 Carpinus fangiana HOM05D006867 ORTHO05D008676 6.5e-16 90.1 448 22.5


User provided reference genes

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