Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 0.0e+00 1485.7 777 100.0
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 0.0e+00 1172.5 791 81.4
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 0.0e+00 1144.8 794 80.1
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 0.0e+00 1134.4 793 79.6
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 0.0e+00 1117.1 791 78.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 0.0e+00 1082.4 789 76.7
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 0.0e+00 1080.1 789 77.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.2e-309 1066.2 792 75.8
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.0e-289 998.4 779 74.6
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.1e-288 996.5 799 71.5
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.9e-288 995.7 791 70.8
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 5.6e-288 994.2 738 75.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.7e-236 823.2 629 75.2
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 2.8e-122 443.7 434 62.4
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.9e-97 361.3 816 36.3
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 2.3e-92 344.4 809 35.4
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 5.6e-86 323.2 811 35.4
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-80 305.4 865 32.9
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.0e-79 300.8 833 34.0
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.5e-78 298.5 802 34.3
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.5e-78 298.5 791 34.4
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.3e-77 295.4 861 32.2
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 6.2e-77 293.1 801 33.7
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.4e-75 287.3 866 33.0
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.3e-74 285.4 766 35.2
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 9.3e-73 279.3 855 31.9
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.6e-72 278.5 853 31.5
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.5e-72 277.3 812 33.4
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 1.0e-71 275.8 378 50.0
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.3e-70 270.8 808 32.8
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.3e-69 268.9 378 49.7
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 5.3e-68 263.5 609 36.3
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 1.5e-67 261.9 797 33.1
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.3e-66 258.8 784 32.5
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.7e-66 258.5 795 33.5
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 2.9e-66 257.7 832 31.7
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 4.9e-66 256.9 805 31.7
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.1e-65 255.8 846 31.8
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.4e-65 255.4 820 32.0
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 2.4e-65 254.6 801 31.5
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 2.4e-65 254.6 819 32.4
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 3.2e-65 254.2 843 30.0
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 9.3e-65 252.7 803 30.8
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.2e-64 252.3 815 32.8
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 6.0e-64 250.0 831 31.4
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 6.2e-61 240.0 773 32.7
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.4e-60 238.8 965 28.2
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.8e-60 238.4 813 30.6
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.9e-58 231.1 805 31.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 4.9e-58 230.3 851 30.6
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.5e-57 228.0 789 31.7
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 2.3e-55 221.5 893 29.0
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.9e-55 220.7 851 30.4
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 6.7e-55 219.9 812 30.3
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.7e-54 216.9 851 30.3
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.7e-54 216.9 867 30.1
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 9.6e-54 216.1 839 29.2
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.6e-53 215.3 754 31.4
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 2.8e-53 214.5 812 29.9
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.1e-52 212.6 841 29.7
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.1e-52 212.6 743 32.3
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 6.9e-52 209.9 833 28.5
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 6.9e-52 209.9 817 29.5
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 8.5e-50 203.0 765 30.6
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 2.5e-49 201.4 821 29.2
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.9e-48 196.4 818 27.6
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 7.9e-48 196.4 815 30.1
BcaB02g09549 Brassica carinata HOM05D000603 ORTHO05D006412 1.8e-47 195.3 347 44.4
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.3e-47 194.9 839 27.4
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 3.0e-47 194.5 978 27.2
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 3.9e-47 194.1 849 29.1
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 3.3e-46 191.0 853 28.4
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 4.3e-46 190.7 798 28.3
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.3e-45 189.1 217 58.1
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.3e-45 189.1 217 58.1
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.3e-45 189.1 811 27.6
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.3e-45 189.1 787 29.9
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 1.6e-45 188.7 815 28.3
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 8.2e-45 186.4 914 27.2
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.4e-43 181.0 811 28.4
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 4.5e-43 180.6 218 47.7
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 7.7e-43 179.9 831 27.8
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 5.0e-42 177.2 811 28.0
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 6.5e-42 176.8 789 26.7
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 8.5e-42 176.4 209 47.4
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 3.2e-41 174.5 184 62.0
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 6.7e-39 166.8 808 27.1
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 1.1e-38 166.0 882 28.3
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.0e-38 165.2 899 27.1
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.0e-38 165.2 793 27.2
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 7.4e-38 163.3 806 26.1
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 9.7e-38 162.9 874 26.5
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.7e-37 161.0 832 27.8
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.7e-37 161.0 811 27.9
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 4.5e-35 154.1 715 30.3
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.0e-34 152.9 799 27.9
AL6G38770 Arabidopsis lyrata HOM05D024724 ORTHO05D038645 5.0e-34 150.6 310 43.2
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 5.0e-34 150.6 562 32.9
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 3.2e-33 147.9 578 29.8
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.8e-29 134.8 572 29.4
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 3.7e-29 134.4 877 26.1
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.4e-28 132.5 134 48.5
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.2e-27 129.4 135 43.7
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-27 129.0 167 41.9
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 1.6e-27 129.0 824 27.3
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.5e-25 121.7 834 25.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.2e-25 121.3 804 26.0
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 4.2e-25 120.9 906 24.9
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.2e-24 119.4 599 29.4
BcaB02g09103 Brassica carinata HOM05D005434 ORTHO05D006412 6.1e-24 117.1 138 54.3
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 4.0e-23 114.4 157 41.4
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.6e-22 111.7 871 24.8
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 4.4e-22 110.9 671 26.7
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.2e-21 108.6 99 56.6
BcaC02g11600 Brassica carinata HOM05D024878 ORTHO05D039720 1.1e-20 106.3 173 49.1
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.8e-20 105.5 106 50.0
BcaC02g12612 Brassica carinata HOM05D000603 ORTHO05D018684 2.0e-19 102.1 95 61.1
BolC4t21719H Brassica oleracea HOM05D000603 ORTHO05D018684 5.0e-18 97.4 78 66.7
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 6.5e-18 97.1 399 31.3
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 8.5e-18 96.7 662 27.0
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.8e-15 89.0 411 29.7
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 8.8e-15 86.7 576 27.1
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 5.9e-11 73.9 174 26.4
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.9e-09 68.9 474 26.8
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.6e-08 65.9 109 35.8
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 3.6e-08 64.7 175 24.0
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.0e-07 63.2 74 44.6
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.0e-07 63.2 119 39.5
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.3e-07 62.0 637 22.8
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.3e-07 62.0 579 24.7
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 6.8e-07 60.5 171 28.1


User provided reference genes

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