Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 0.0e+00 1729.1 905 100.0
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 7.0e-282 974.2 1105 56.6
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 7.3e-279 964.1 1095 56.2
AT2G46240 Arabidopsis thaliana HOM05D006269 ORTHO05D001487 2.2e-267 926.0 1064 54.9
AL4G45510 Arabidopsis lyrata HOM05D006269 ORTHO05D001487 4.1e-266 921.8 1068 54.9
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 9.2e-266 920.6 1112 53.8
BraA05t19151Z Brassica rapa HOM05D006269 ORTHO05D001487 1.2e-265 920.2 1122 53.6
BcaC02g12701 Brassica carinata HOM05D006269 ORTHO05D001487 3.2e-258 895.6 1096 54.0
Sp4g28290 Schrenkiella parvula HOM05D006269 ORTHO05D001487 1.9e-239 833.2 668 70.8
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 3.7e-238 828.9 1082 50.2
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 1.0e-155 555.1 1032 41.0
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 4.0e-75 287.3 1107 28.9
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 4.0e-67 260.8 809 31.3
Thecc.01G349600 Theobroma cacao HOM05D006269 ORTHO05D001487 6.8e-67 260.0 698 32.4
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 4.4e-66 257.3 666 33.9
VMungo0331G1091 Vigna mungo HOM05D006269 ORTHO05D001487 4.3e-61 240.7 1106 26.4
Cfa003851 Carpinus fangiana HOM05D006269 ORTHO05D001487 1.6e-60 238.8 1227 26.3
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 8.0e-60 236.5 1033 28.4
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 1.4e-59 235.7 1228 26.8
Actinidia20177 Actinidia chinensis HOM05D006269 ORTHO05D001487 1.5e-58 232.3 1074 27.5
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 3.4e-58 231.1 703 31.6
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 4.4e-58 230.7 679 31.5
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 9.8e-58 229.6 998 28.5
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 2.9e-57 228.0 1012 27.8
Gorai.004G153900 Gossypium raimondii HOM05D006269 ORTHO05D001487 4.6e-55 220.7 779 29.5
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 4.6e-55 220.7 1050 27.4
Phvul.010G107400 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 2.3e-54 218.4 1149 25.2
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 3.9e-54 217.6 838 28.0
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 6.6e-54 216.9 855 27.4
Glyma.16G030000 Glycine max HOM05D006269 ORTHO05D001487 2.5e-53 214.9 726 28.7
Migut.N01576 Erythranthe guttata HOM05D006269 ORTHO05D001487 3.3e-53 214.5 997 27.9
Gohir.A08G126800 Gossypium hirsutum HOM05D006269 ORTHO05D001487 2.1e-52 211.8 778 29.3
Gohir.D08G148200 Gossypium hirsutum HOM05D006269 ORTHO05D001487 2.1e-52 211.8 841 28.3
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 7.5e-50 203.4 998 26.6
Sc01g0003100 Simmondsia chinensis HOM05D006269 ORTHO05D001487 1.7e-49 202.2 1160 25.2
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 2.2e-49 201.8 1005 25.6
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 3.7e-49 201.1 853 27.4
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 4.9e-49 200.7 570 31.2
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 3.2e-48 198.0 649 30.4
Aqoxy1G02938 Aquilegia oxysepala HOM05D006269 ORTHO05D001487 1.6e-47 195.7 720 29.2
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 4.6e-47 194.1 1042 27.4
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 6.0e-47 193.7 978 26.0
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 1.0e-46 193.0 691 28.1
CAN.G78.145 Capsicum annuum HOM05D006269 ORTHO05D001487 1.7e-46 192.2 888 26.4
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 2.3e-46 191.8 874 27.1
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 3.9e-46 191.0 811 29.3
Lj3g0001651 Lotus japonicus HOM05D006269 ORTHO05D001487 6.6e-46 190.3 727 28.5
SGA_v2.0_scaffold11G05704 Striga asiatica HOM05D006269 ORTHO05D001487 6.6e-46 190.3 978 26.4
Hund27233 Selenicereus undatus HOM05D006269 ORTHO05D001487 8.6e-46 189.9 681 29.7
AUR62022637 Chenopodium quinoa HOM05D006269 ORTHO05D001487 3.3e-45 188.0 814 29.4
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 2.3e-43 181.8 682 28.6
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 4.0e-43 181.0 787 27.8
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 5.2e-43 180.6 1007 25.9
EL10Ac1g00334 Beta vulgaris HOM05D006269 ORTHO05D001487 1.2e-42 179.5 916 28.4
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 1.5e-42 179.1 740 28.6
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.0e-42 178.7 770 27.5
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 5.8e-42 177.2 848 26.8
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 1.3e-41 176.0 748 27.9
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 1.3e-41 176.0 1141 24.5
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.7e-41 174.5 762 26.8
TPR.G21288 Trifolium pratense HOM05D006269 ORTHO05D001487 6.4e-41 173.7 1115 24.8
Sed0002830 Sechium edule HOM05D006269 ORTHO05D001487 7.1e-40 170.2 704 27.8
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 1.2e-39 169.5 991 25.4
Ah.05g180020 Amaranthus hybridus HOM05D006269 ORTHO05D001487 2.3e-38 165.2 962 26.6
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 1.1e-37 162.9 1042 25.2
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 4.3e-37 161.0 810 26.7
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 7.3e-37 160.2 870 27.5
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 9.6e-37 159.8 767 26.9
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 3.6e-36 157.9 415 34.5
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.2e-34 152.9 812 26.8
Lsat_1_v5_gn_3_138421 Lactuca sativa HOM05D006269 ORTHO05D001487 1.2e-34 152.9 639 28.0
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 5.8e-34 150.6 759 26.4
Solyc01g095320.4 Solanum lycopersicum HOM05D006269 ORTHO05D001487 2.2e-33 148.7 1031 23.7
Sopen01g039110 Solanum pennellii HOM05D006269 ORTHO05D001487 6.4e-33 147.1 994 24.0
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 1.1e-32 146.4 947 25.0
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 1.4e-32 146.0 984 24.9
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 3.2e-32 144.8 514 28.0
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 5.6e-29 134.0 867 25.6
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 3.6e-28 131.3 908 25.0
MBI06_g04303_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 4.8e-28 131.0 409 28.9
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 2.4e-27 128.6 842 26.0
Phvul.010G106600 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 6.9e-27 127.1 428 27.6
HanXRQChr06g0166911 Helianthus annuus HOM05D006269 ORTHO05D001487 1.9e-21 109.0 399 28.8
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 8.1e-20 103.6 575 26.1
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 3.1e-19 101.7 150 44.0
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 4.5e-18 97.8 570 27.9
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 9.9e-18 96.7 214 35.5
Nitab4.5_0000305g0340 Nicotiana tabacum HOM05D006269 ORTHO05D001487 3.8e-17 94.7 398 24.9
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.8e-17 94.7 598 25.1
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 8.4e-17 93.6 209 34.9
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 7.1e-16 90.5 612 22.9
Zm00001eb095310 Zea mays HOM05D006269 ORTHO05D001487 9.3e-16 90.1 310 31.9
Glyma.18G186200 Glycine max HOM05D006269 ORTHO05D001487 1.6e-15 89.4 602 25.2
AagrBONN_evm.TU.Sc2ySwM_368.336 Anthoceros agrestis HOM05D006269 ORTHO05D001487 1.0e-14 86.7 167 33.5
Oeu004921.1 Olea europaea HOM05D006269 ORTHO05D001487 4.8e-12 77.8 187 33.7
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 1.1e-11 76.6 256 28.5
Pp3c4_24420 Physcomitrium patens HOM05D006269 ORTHO05D001487 6.9e-11 73.9 129 40.3
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 9.0e-11 73.6 264 26.5
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.4e-10 71.6 336 26.2
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.5e-10 71.2 138 31.2
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 5.8e-10 70.9 118 33.9
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 7.6e-10 70.5 178 33.1
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.2e-09 68.9 173 30.6
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 2.9e-09 68.6 284 29.6
Pp3c19_7760 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.9e-09 68.6 115 37.4
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 2.9e-09 68.6 107 39.3
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 4.9e-09 67.8 244 29.5
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 6.5e-09 67.4 113 33.6
Zm00001eb382930 Zea mays HOM05D006269 ORTHO05D001487 6.5e-09 67.4 177 32.2
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.1e-08 66.6 147 34.0
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 1.4e-08 66.2 127 37.0
Pp3c21_6840 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.4e-08 66.2 111 39.6
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 1.9e-08 65.9 128 37.5
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 2.5e-08 65.5 128 38.3
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.5e-08 65.5 102 36.3
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 2.5e-08 65.5 102 35.3
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 3.2e-08 65.1 121 32.2
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 4.2e-08 64.7 169 28.4
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 4.2e-08 64.7 152 30.3
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 4.2e-08 64.7 140 29.3
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 5.5e-08 64.3 152 30.3
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 5.5e-08 64.3 102 35.3
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 7.1e-08 63.9 126 34.9
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 9.3e-08 63.5 128 30.5
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 9.3e-08 63.5 107 35.5
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 9.3e-08 63.5 292 27.4
SEGI_09232 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 9.3e-08 63.5 190 26.8
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 1.2e-07 63.2 97 36.1
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.2e-07 63.2 117 36.8
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.2e-07 63.2 119 32.8
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 1.6e-07 62.8 133 32.3
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.6e-07 62.8 219 29.7
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 2.1e-07 62.4 127 35.4
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 2.7e-07 62.0 250 26.0
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 2.7e-07 62.0 138 33.3
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 2.7e-07 62.0 138 30.4
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.7e-07 62.0 101 37.6
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 2.7e-07 62.0 107 36.4
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 3.5e-07 61.6 105 34.3
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 3.5e-07 61.6 139 28.8
Sp1g10730 Schrenkiella parvula HOM05D002685 ORTHO05D001487 4.6e-07 61.2 130 34.6
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.0e-07 60.8 101 36.6
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 6.0e-07 60.8 125 33.6
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 6.0e-07 60.8 160 30.0
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 6.0e-07 60.8 105 37.1
BraA08t35225Z Brassica rapa HOM05D002685 ORTHO05D001487 7.9e-07 60.5 132 34.1
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 7.9e-07 60.5 111 36.0
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 7.9e-07 60.5 148 31.1
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 1.0e-06 60.1 104 34.6
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 1.0e-06 60.1 171 25.7
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.0e-06 60.1 179 26.8
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.3e-06 59.7 104 34.6
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.3e-06 59.7 104 34.6
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.3e-06 59.7 99 39.4
A08p33050 Brassica napus HOM05D002685 ORTHO05D001487 1.8e-06 59.3 132 33.3
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 1.8e-06 59.3 130 33.8
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 1.8e-06 59.3 130 33.8
Mapoly0097s0036 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.8e-06 59.3 317 25.6
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.8e-06 59.3 103 32.0
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.3e-06 58.9 101 35.6
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.3e-06 58.9 101 37.6
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 2.3e-06 58.9 129 28.7
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.3e-06 58.9 114 35.1
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 2.3e-06 58.9 152 28.3
SEGI_19830 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.3e-06 58.9 149 28.2
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 2.3e-06 58.9 160 30.0
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 3.0e-06 58.5 101 35.6
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 3.0e-06 58.5 401 23.2
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 3.0e-06 58.5 112 33.9
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 3.0e-06 58.5 106 33.0
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 3.0e-06 58.5 151 29.8
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.0e-06 58.5 229 26.2
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 3.9e-06 58.2 102 34.3
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 3.9e-06 58.2 158 25.9
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 3.9e-06 58.2 97 35.1
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 3.9e-06 58.2 103 35.9
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 3.9e-06 58.2 101 36.6
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 3.9e-06 58.2 116 27.6
Atru.chr1.2459 Acer truncatum HOM05D002685 ORTHO05D001487 5.1e-06 57.8 113 31.9
SMO172G0062 Selaginella moellendorffii HOM05D006269 ORTHO05D001487 5.1e-06 57.8 262 26.7
Cc09_g00900 Coffea canephora HOM05D002685 ORTHO05D001487 6.7e-06 57.4 105 34.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 6.7e-06 57.4 116 35.3
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 6.7e-06 57.4 104 33.7
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 8.7e-06 57.0 101 36.6
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 8.7e-06 57.0 106 30.2


User provided reference genes

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