Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 2196.4 1123 100.0
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1895.6 1196 83.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1874.8 1216 81.9
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1778.5 1236 76.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1718.4 1235 74.0
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1694.9 1187 76.6
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1681.0 1207 73.8
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1664.4 1228 72.6
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1616.7 1211 71.3
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1595.1 1235 70.9
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1592.8 1234 71.3
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1579.7 1229 70.6
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1537.7 1101 74.8
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1522.7 1033 76.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1406.0 1244 61.9
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1119.0 1264 49.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1264 49.8
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1109.4 1224 50.4
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1078.2 1265 48.2
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 1.5e-311 1072.8 1249 48.5
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 1.2e-310 1070.1 1174 49.9
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 2.6e-310 1068.9 1249 48.4
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 9.9e-310 1067.0 1249 48.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 2.9e-309 1065.4 1255 48.6
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 4.6e-307 1058.1 1263 47.7
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 7.9e-307 1057.4 1254 47.5
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 4.3e-305 1051.6 1263 47.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 3.6e-304 1048.5 1256 48.1
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 5.3e-303 1044.6 1224 49.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 1.5e-302 1043.1 1266 47.0
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 3.8e-301 1038.5 1028 53.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 8.4e-301 1037.3 1257 47.3
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 1.2e-299 1033.5 1266 47.0
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 4.6e-299 1031.6 1245 46.9
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 6.7e-298 1027.7 698 77.8
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.7e-296 1021.9 1246 46.8
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 1.1e-295 1020.4 1102 50.6
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 1.8e-295 1019.6 1263 46.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.2e-293 1012.7 1245 46.3
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 1.1e-292 1010.4 1248 46.6
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 7.1e-292 1007.7 1208 47.4
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 2.1e-291 1006.1 1262 45.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 3.5e-291 1005.4 1239 45.3
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 3.9e-290 1001.9 1271 45.3
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 4.3e-289 998.4 1277 45.2
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 2.1e-288 996.1 1251 45.7
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 2.8e-288 995.7 1253 46.3
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 1.1e-287 993.8 1247 45.2
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 2.9e-285 985.7 1259 45.2
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 3.8e-285 985.3 1252 46.4
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 2.3e-282 976.1 1270 44.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 1.5e-281 973.4 1262 44.5
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 1.5e-281 973.4 1205 45.6
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 4.8e-280 968.4 1258 44.6
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 1.1e-279 967.2 1244 45.1
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 2.4e-279 966.1 1248 44.9
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 5.3e-279 964.9 1262 44.5
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 3.4e-278 962.2 1253 44.5
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 8.5e-277 957.6 1258 44.3
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 7.2e-276 954.5 1239 44.5
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 4.6e-275 951.8 1247 44.8
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 1.1e-273 947.2 1242 44.9
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 5.7e-273 944.9 1239 43.7
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 1.3e-272 943.7 1249 44.0
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 8.2e-272 941.0 1172 46.2
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 1.4e-271 940.3 1229 43.9
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 2.0e-270 936.4 1239 43.8
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 1.3e-269 933.7 1239 43.8
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 4.7e-267 925.2 1236 43.9
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 7.9e-267 924.5 1206 44.6
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 5.3e-263 911.8 1236 42.8
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 7.0e-263 911.4 1247 43.6
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 7.7e-262 907.9 1246 43.1
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 2.1e-259 899.8 1084 48.2
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 6.1e-259 898.3 1229 43.0
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.8e-258 896.7 1220 43.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 2.3e-258 896.3 1012 49.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.7e-256 890.2 934 50.7
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 2.2e-256 889.8 1245 43.1
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 3.1e-255 885.9 1272 41.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 2.7e-251 872.8 1259 41.7
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.6e-251 872.5 1150 44.7
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 2.3e-250 869.8 1291 42.0
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 1.5e-249 867.1 1222 42.6
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 2.0e-249 866.7 1230 41.2
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 9.8e-249 864.4 1216 42.2
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 2.2e-248 863.2 1237 41.6
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 2.0e-241 840.1 1237 42.1
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 1.3e-240 837.4 856 54.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 4.0e-234 815.8 911 50.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 4.1e-231 805.8 909 49.3
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.2e-227 794.3 1212 40.1
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.4e-207 727.6 976 42.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.6e-203 714.1 944 44.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 3.0e-189 666.8 1214 35.3
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.6e-182 644.4 1180 35.7
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 3.9e-181 639.8 1059 36.8
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 9.0e-178 628.6 891 41.8
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.9e-167 594.3 668 47.0
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.3e-140 503.8 640 42.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 4.2e-135 486.9 657 40.9
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.0e-133 482.3 564 48.2
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.2e-132 478.8 731 38.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.3e-131 473.0 717 37.9
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 5.0e-128 463.4 679 39.6
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.9e-115 421.0 637 38.9
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 8.6e-104 382.9 427 50.6
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.2e-94 350.1 544 37.9
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 2.1e-86 325.1 236 67.8
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 2.8e-86 324.7 383 47.5
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.9e-75 288.1 389 42.9
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 2.9e-75 288.1 364 48.6
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.3e-71 274.2 344 47.7
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 3.7e-70 271.2 333 48.6
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 3.7e-70 271.2 333 48.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 6.2e-70 270.4 429 34.7
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.0e-64 253.1 650 28.6
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 7.6e-60 236.9 425 33.6
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-53 214.2 337 34.7
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.2e-44 186.4 356 37.4
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 3.8e-43 181.4 395 29.4
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.8e-30 138.7 153 43.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.0e-28 132.5 186 38.7
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 5.0e-27 127.9 323 33.1
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 3.0e-24 118.6 152 44.7
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.5e-18 99.8 121 42.1
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 2.3e-16 92.4 371 25.6
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.6e-12 79.7 86 47.7
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 5.7e-07 61.2 115 34.8
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-06 59.3 113 33.6
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 8.3e-06 57.4 122 29.5


User provided reference genes

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