Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001178m.g Eutrema salsugineum HOM05D003376 ORTHO05D011035 7.0e-164 580.5 278 100.0
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 8.3e-117 424.1 334 64.4
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 9.2e-116 420.6 336 63.1
AL8G17350 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.2e-115 420.2 336 63.1
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.7e-115 419.1 336 63.1
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.5e-115 418.7 336 63.1
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 6.6e-114 414.5 336 62.5
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 6.2e-104 381.3 324 60.8
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.2e-102 377.1 305 63.0
AL3G45070 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.6e-96 356.7 331 56.8
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.3e-65 252.3 331 45.0
BolC6t37675H Brassica oleracea HOM05D003376 ORTHO05D011035 1.5e-44 184.1 124 70.2
Gorai.007G235600 Gossypium raimondii HOM05D003376 ORTHO05D011089 7.7e-38 161.8 211 43.1
BcaB05g22926 Brassica carinata HOM05D003376 ORTHO05D011035 2.9e-37 159.8 100 71.0
A06p25210 Brassica napus HOM05D003376 ORTHO05D011035 5.0e-37 159.1 100 73.0
ECA248G2939 Erigeron canadensis HOM05D003376 ORTHO05D011089 1.1e-36 157.9 343 32.4
BcaB06g26710 Brassica carinata HOM05D003376 ORTHO05D011035 1.5e-36 157.5 100 75.0
A05p12460 Brassica napus HOM05D003376 ORTHO05D011035 2.5e-36 156.8 100 72.0
A09p27410 Brassica napus HOM05D003376 ORTHO05D011035 2.5e-36 156.8 100 72.0
A09p25410 Brassica napus HOM05D003376 ORTHO05D011035 5.5e-36 155.6 100 72.0
A04p12700 Brassica napus HOM05D003376 ORTHO05D011035 1.6e-35 154.1 100 71.0
ECA246G4097 Erigeron canadensis HOM05D003376 ORTHO05D000002 6.1e-35 152.1 335 31.9
C06p15850 Brassica napus HOM05D003376 ORTHO05D011035 1.0e-34 151.4 95 73.7
Thhalv10003399m.g Eutrema salsugineum HOM05D003376 ORTHO05D011089 1.2e-33 147.9 128 64.8
BolC6t36777H Brassica oleracea HOM05D003376 ORTHO05D011035 2.0e-33 147.1 95 71.6
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 3.4e-33 146.4 348 30.2
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.2e-32 143.7 326 30.4
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 2.2e-32 143.7 326 30.4
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 2.2e-32 143.7 326 30.4
QL07p038177 Quercus lobata HOM05D003376 ORTHO05D000002 4.8e-32 142.5 307 35.2
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 2.4e-31 140.2 317 31.5
Gorai.012G084900 Gossypium raimondii HOM05D013520 ORTHO05D011089 2.4e-31 140.2 285 32.6
Lj2g0012661 Lotus japonicus HOM05D005324 ORTHO05D011089 3.1e-31 139.8 327 30.6
Cc00_g23170 Coffea canephora HOM05D003376 ORTHO05D011089 4.1e-31 139.4 266 32.7
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 5.4e-31 139.0 325 30.2
Gorai.002G111800 Gossypium raimondii HOM05D003376 ORTHO05D011089 7.0e-31 138.7 299 31.1
Lj3g0012797 Lotus japonicus HOM05D003326 ORTHO05D001185 4.5e-30 136.0 325 29.8
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 7.7e-30 135.2 331 31.1
Cc00_g33410 Coffea canephora HOM05D003376 ORTHO05D011089 5.0e-29 132.5 310 31.0
AL3G45060 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 6.6e-29 132.1 76 76.3
Atru.chr1.3843 Acer truncatum HOM05D005324 ORTHO05D000002 3.3e-28 129.8 330 30.3
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 2.8e-27 126.7 251 29.9
Cc00_g07190 Coffea canephora HOM05D003376 ORTHO05D000002 4.7e-27 125.9 167 43.7
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.0e-26 123.2 326 30.1
Carub.0008s0701 Capsella rubella HOM05D005324 ORTHO05D000800 2.6e-25 120.2 286 30.4
Gorai.007G230600 Gossypium raimondii HOM05D013520 ORTHO05D011089 5.7e-25 119.0 279 31.9
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.5e-25 118.6 309 28.8
COL.COLO4_29705 Corchorus olitorius HOM05D029132 ORTHO05D011089 4.9e-24 115.9 155 41.9
Thhalv10002258m.g Eutrema salsugineum HOM05D003376 ORTHO05D011089 1.4e-23 114.4 255 30.6
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.1e-23 112.8 174 37.4
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 1.6e-22 110.9 264 31.8
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-22 110.2 174 35.6
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 7.8e-22 108.6 289 28.7
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.8e-22 108.6 165 37.6
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 1.3e-21 107.8 193 35.2
Carub.0002s0911 Capsella rubella HOM05D003376 ORTHO05D011089 5.0e-21 105.9 164 40.2
Cc00_g07770 Coffea canephora HOM05D005324 ORTHO05D011089 5.0e-21 105.9 216 34.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.5e-20 104.4 176 35.2
ECA246G5256 Erigeron canadensis HOM05D003376 ORTHO05D011089 4.3e-20 102.8 119 45.4
BcaB05g23144 Brassica carinata HOM05D003376 ORTHO05D011035 1.6e-19 100.9 79 63.3
BraA09t38517Z Brassica rapa HOM05D003376 ORTHO05D011035 3.6e-19 99.8 82 57.3
Ca_15185_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.6e-19 99.8 175 33.7
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.0e-19 98.6 165 35.2
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.3e-18 97.1 295 26.4
BolC4t23956H Brassica oleracea HOM05D003376 ORTHO05D011035 1.7e-16 90.9 177 37.9
Carub.0005s0867 Capsella rubella HOM05D003376 ORTHO05D011089 1.1e-15 88.2 152 34.9
Carub.0005s0868 Capsella rubella HOM05D003376 ORTHO05D011089 1.9e-15 87.4 160 35.6
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-15 87.4 104 44.2
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-15 87.0 147 35.4
Cc00_g18200 Coffea canephora HOM05D013520 ORTHO05D011089 3.2e-15 86.7 188 30.9
Cc00_g24840 Coffea canephora HOM05D003376 ORTHO05D011089 4.1e-15 86.3 190 29.5
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-14 84.7 145 33.8
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-14 83.6 101 41.6
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 1.3e-13 81.3 94 44.7
Ca_14696_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-13 81.3 104 41.3
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-13 80.9 94 43.6
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-13 80.9 94 43.6
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-13 80.5 122 39.3
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.0e-13 80.1 148 36.5
COL.COLO4_32096 Corchorus olitorius HOM05D003376 ORTHO05D011089 5.0e-13 79.3 221 30.3
COL.COLO4_29282 Corchorus olitorius HOM05D003376 ORTHO05D011089 1.5e-12 77.8 186 31.2
Ca_04091_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-12 77.4 134 36.6
Ca_30525_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-12 77.4 134 36.6
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 5.6e-12 75.9 104 39.4
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.6e-12 75.9 104 39.4
BolC1t03799H Brassica oleracea HOM05D003376 ORTHO05D011035 2.8e-11 73.6 37 83.8
COL.COLO4_27205 Corchorus olitorius HOM05D003376 ORTHO05D011089 6.2e-11 72.4 228 26.8
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-10 70.1 83 43.4
BraA06t26273Z Brassica rapa HOM05D003376 ORTHO05D011035 6.8e-10 68.9 55 61.8
BraA06t26275Z Brassica rapa HOM05D003376 ORTHO05D011035 6.8e-10 68.9 55 61.8
A08p07150 Brassica napus HOM05D003376 ORTHO05D011035 2.6e-09 67.0 48 60.4
Gorai.001G159600 Gossypium raimondii HOM05D013520 ORTHO05D011089 5.8e-09 65.9 63 54.0
SEGI_22445 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 9.8e-09 65.1 120 35.0
BolC1t03803H Brassica oleracea HOM05D003376 ORTHO05D011035 2.2e-08 63.9 48 58.3
HanXRQChr02g0042331 Helianthus annuus HOM05D000158 ORTHO05D000197 2.2e-08 63.9 166 26.5
C04p24540 Brassica napus HOM05D003376 ORTHO05D011035 4.1e-07 59.7 58 50.0
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 5.4e-07 59.3 173 24.3
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 5.4e-07 59.3 173 24.3
BraA02t07682Z Brassica rapa HOM05D003376 ORTHO05D011035 9.2e-07 58.5 28 85.7
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 9.2e-07 58.5 130 25.4
Manes.09G089621 Manihot esculenta HOM05D000158 ORTHO05D000002 1.2e-06 58.2 168 25.6
TPR.G1896 Trifolium pratense HOM05D001145 ORTHO05D008176 2.1e-06 57.4 167 27.5
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 2.7e-06 57.0 130 25.4
TPR.G27444 Trifolium pratense HOM05D000158 ORTHO05D002858 2.7e-06 57.0 167 26.9
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-06 56.6 43 53.5
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-06 56.6 43 53.5
SEGI_21685 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 4.6e-06 56.2 114 32.5
TPR.G39757 Trifolium pratense HOM05D000158 ORTHO05D002858 4.6e-06 56.2 166 25.9
arahy.Tifrunner.gnm1.ann1.DSPJ6U Arachis hypogaea HOM05D000158 ORTHO05D002858 6.0e-06 55.8 101 33.7
TPR.G550 Trifolium pratense HOM05D000158 ORTHO05D002858 6.0e-06 55.8 167 26.9
arahy.Tifrunner.gnm1.ann1.Q3LM9I Arachis hypogaea HOM05D000158 ORTHO05D002858 7.8e-06 55.5 166 25.3
TPR.G22125 Trifolium pratense HOM05D000158 ORTHO05D002858 7.8e-06 55.5 167 26.9
TPR.G33026 Trifolium pratense HOM05D000158 ORTHO05D002858 7.8e-06 55.5 167 26.9


User provided reference genes

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