Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001131m.g Eutrema salsugineum HOM05D000289 ORTHO05D012597 2.0e-71 272.3 140 100.0
Sp2g12690 Schrenkiella parvula HOM05D000289 ORTHO05D012597 1.9e-29 132.9 126 62.7
A02p31800 Brassica napus HOM05D000289 ORTHO05D012597 2.5e-29 132.5 116 63.8
BraA02t08189Z Brassica rapa HOM05D000289 ORTHO05D012597 2.5e-29 132.5 116 63.8
BcaB07g30418 Brassica carinata HOM05D000289 ORTHO05D012597 7.4e-29 131.0 126 60.3
BcaC03g17009 Brassica carinata HOM05D000289 ORTHO05D012597 2.8e-28 129.0 116 62.1
C02p49190 Brassica napus HOM05D000289 ORTHO05D012597 2.8e-28 129.0 116 62.1
BolC2t11007H Brassica oleracea HOM05D000289 ORTHO05D012597 2.8e-28 129.0 116 62.1
Carub.0005s0022 Capsella rubella HOM05D000289 ORTHO05D012597 9.9e-26 120.6 116 59.5
AL5G10190 Arabidopsis lyrata HOM05D000289 ORTHO05D012597 4.9e-25 118.2 126 56.3
AT2G01240 Arabidopsis thaliana HOM05D000289 ORTHO05D012597 6.0e-23 111.3 108 63.0
BcaC03g17006 Brassica carinata HOM05D000289 ORTHO05D012597 1.4e-19 100.1 92 56.5
C02p49180 Brassica napus HOM05D000289 ORTHO05D012597 1.4e-19 100.1 92 56.5
BolC2t11006H Brassica oleracea HOM05D000289 ORTHO05D012597 1.4e-19 100.1 92 56.5
A02p31770 Brassica napus HOM05D014485 ORTHO05D021870 5.3e-19 98.2 88 58.0
BraA02t08185Z Brassica rapa HOM05D014485 ORTHO05D021870 5.3e-19 98.2 88 58.0
C02p49160 Brassica napus HOM05D014485 ORTHO05D012597 3.5e-15 85.5 103 49.5
BcaC03g17004 Brassica carinata HOM05D000289 ORTHO05D012597 1.0e-14 84.0 103 48.5
BolC2t11004H Brassica oleracea HOM05D014485 ORTHO05D012597 1.0e-14 84.0 103 48.5
A02p31790 Brassica napus HOM05D014485 ORTHO05D012597 5.1e-14 81.6 107 47.7
BraA02t08188Z Brassica rapa HOM05D014485 ORTHO05D012597 5.1e-14 81.6 107 47.7
CARHR143770 Cardamine hirsuta HOM05D014485 ORTHO05D012597 3.7e-12 75.5 69 60.9
Lsat_1_v5_gn_8_41400 Lactuca sativa HOM05D000289 ORTHO05D000208 2.6e-10 69.3 114 33.3
Peaxi162Scf00179g00539 Petunia axillaris HOM05D000289 ORTHO05D000208 5.9e-10 68.2 114 33.3
Dinv16135 Davidia involucrata HOM05D000289 ORTHO05D000208 1.0e-09 67.4 111 35.1
Atru.chr11.231 Acer truncatum HOM05D000289 ORTHO05D000208 1.3e-09 67.0 109 32.1
Nitab4.5_0017493g0010 Nicotiana tabacum HOM05D000289 ORTHO05D000208 1.3e-09 67.0 114 33.3
Aqoxy3G00201 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 2.9e-09 65.9 136 30.1
Lsat_1_v5_gn_4_14841 Lactuca sativa HOM05D000289 ORTHO05D000208 2.9e-09 65.9 113 33.6
Manes.14G106700 Manihot esculenta HOM05D000289 ORTHO05D000208 5.0e-09 65.1 111 36.0
Lj2g0022002 Lotus japonicus HOM05D000289 ORTHO05D000208 1.1e-08 63.9 120 30.0
Potri.015G044300 Populus trichocarpa HOM05D000289 ORTHO05D000208 1.1e-08 63.9 126 33.3
Lalb_Chr21g0308751 Lupinus albus HOM05D000289 ORTHO05D000208 1.9e-08 63.2 113 32.7
Sabra15G0040800 Salix brachista HOM05D000289 ORTHO05D000208 1.9e-08 63.2 88 37.5
TAR622G0664 Trochodendron aralioides HOM05D000289 ORTHO05D000208 2.5e-08 62.8 140 32.1
TAR622G0899 Trochodendron aralioides HOM05D000289 ORTHO05D000208 2.5e-08 62.8 140 32.1
CAN.G610.25 Capsicum annuum HOM05D000289 ORTHO05D000208 3.2e-08 62.4 114 31.6
Cc11_g09690 Coffea canephora HOM05D000289 ORTHO05D000208 5.5e-08 61.6 113 33.6
MBI09_g25157_MAGBIO Magnolia biondii HOM05D000289 ORTHO05D000208 5.5e-08 61.6 99 34.3
CARHR060920 Cardamine hirsuta HOM05D000289 ORTHO05D000208 9.3e-08 60.8 114 31.6
Oeu014297.1 Olea europaea HOM05D000289 ORTHO05D000208 9.3e-08 60.8 111 33.3
Nn3g17944 Nelumbo nucifera HOM05D000289 ORTHO05D000208 1.2e-07 60.5 99 35.4
MSTRG.2217 Avicennia marina HOM05D000289 ORTHO05D000208 1.6e-07 60.1 112 33.0
SalBow8G2753 Salvia bowleyana HOM05D000289 ORTHO05D000208 1.6e-07 60.1 111 30.6
A02p14830 Brassica napus HOM05D000289 ORTHO05D000208 2.1e-07 59.7 114 31.6
Lalb_Chr05g0224401 Lupinus albus HOM05D000289 ORTHO05D000208 2.1e-07 59.7 102 39.2
Sp5g23250 Schrenkiella parvula HOM05D000289 ORTHO05D000208 2.1e-07 59.7 112 32.1
TPR.G4905 Trifolium pratense HOM05D000289 ORTHO05D000208 2.1e-07 59.7 113 31.0
BcaB05g24358 Brassica carinata HOM05D000289 ORTHO05D000208 2.7e-07 59.3 110 34.5
BraA02t06550Z Brassica rapa HOM05D000289 ORTHO05D000208 3.6e-07 58.9 114 31.6
Lalb_Chr10g0096411 Lupinus albus HOM05D000289 ORTHO05D000208 3.6e-07 58.9 115 28.7
Medtr1g109630 Medicago truncatula HOM05D000289 ORTHO05D000208 3.6e-07 58.9 113 30.1
SalBow4G1338 Salvia bowleyana HOM05D000289 ORTHO05D000208 3.6e-07 58.9 102 36.3
HanXRQChr08g0213431 Helianthus annuus HOM05D000289 ORTHO05D000208 4.6e-07 58.5 114 30.7
Manes.06G065100 Manihot esculenta HOM05D000289 ORTHO05D000208 4.6e-07 58.5 111 33.3
Psat6g224560 Pisum sativum HOM05D000289 ORTHO05D000208 4.6e-07 58.5 113 29.2
QL01p010836 Quercus lobata HOM05D000289 ORTHO05D000208 4.6e-07 58.5 107 30.8
QL93p0145_0005 Quercus lobata HOM05D000289 ORTHO05D000208 4.6e-07 58.5 107 30.8
AL2G27070 Arabidopsis lyrata HOM05D000289 ORTHO05D000208 6.1e-07 58.2 114 30.7
C02p24270 Brassica napus HOM05D000289 ORTHO05D000208 6.1e-07 58.2 114 31.6
AT1G68230 Arabidopsis thaliana HOM05D000289 ORTHO05D000208 7.9e-07 57.8 114 30.7
Glyma.10G270900 Glycine max HOM05D000289 ORTHO05D000208 7.9e-07 57.8 113 29.2
Lj3A880T117 Lonicera japonica HOM05D000289 ORTHO05D000208 7.9e-07 57.8 113 30.1
Migut.L01026 Erythranthe guttata HOM05D000289 ORTHO05D000208 1.0e-06 57.4 112 29.5
Ca_06887_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 1.3e-06 57.0 113 29.2
MELO3C002107.2 Cucumis melo HOM05D000289 ORTHO05D000208 1.3e-06 57.0 113 31.9
FAN18G2068 Fragaria x ananassa HOM05D000289 ORTHO05D000208 1.3e-06 57.0 135 29.6
BcaC03g14932 Brassica carinata HOM05D000289 ORTHO05D000208 1.8e-06 56.6 114 30.7
BolC2t08536H Brassica oleracea HOM05D000289 ORTHO05D000208 1.8e-06 56.6 114 30.7
FvH4_5g16680 Fragaria vesca HOM05D000289 ORTHO05D000208 1.8e-06 56.6 135 29.6
FAN13G2389 Fragaria x ananassa HOM05D000289 ORTHO05D000208 1.8e-06 56.6 135 29.6
Potri.012G054100 Populus trichocarpa HOM05D000289 ORTHO05D000208 1.8e-06 56.6 134 29.1
Carub.0002s1472 Capsella rubella HOM05D000289 ORTHO05D000208 2.3e-06 56.2 114 30.7
ClCG04G010930 Citrullus lanatus HOM05D000289 ORTHO05D000208 2.3e-06 56.2 113 31.9
FAN08G0138 Fragaria x ananassa HOM05D000289 ORTHO05D000208 2.3e-06 56.2 135 29.6
Lalb_Chr09g0332821 Lupinus albus HOM05D000289 ORTHO05D000208 2.3e-06 56.2 136 31.6
Lj5g0024721 Lotus japonicus HOM05D000289 ORTHO05D000208 3.0e-06 55.8 113 28.3
Migut.F00265 Erythranthe guttata HOM05D000289 ORTHO05D000208 3.9e-06 55.5 105 34.3
MD07G1281900 Malus domestica HOM05D000289 ORTHO05D000208 3.9e-06 55.5 102 38.2
MD14G1115200 Malus domestica HOM05D000289 ORTHO05D000208 3.9e-06 55.5 101 33.7
PSO478G4757 Papaver somniferum HOM05D000289 ORTHO05D000208 3.9e-06 55.5 134 32.1
SMO196G0054 Selaginella moellendorffii HOM05D000289 ORTHO05D000208 3.9e-06 55.5 131 32.8
MSTRG.13553 Avicennia marina HOM05D000289 ORTHO05D000208 5.1e-06 55.1 112 28.6
ClCG01G002190 Citrullus lanatus HOM05D000289 ORTHO05D000208 5.1e-06 55.1 114 36.0
Haze_18726 Corylus avellana HOM05D000289 ORTHO05D000208 5.1e-06 55.1 113 33.6
Potri.001G097700 Populus trichocarpa HOM05D000289 ORTHO05D000208 5.1e-06 55.1 102 36.3
Rhsim02G0236800 Rhododendron simsii HOM05D000289 ORTHO05D000208 5.1e-06 55.1 101 36.6
CDE08G0817 Ceratophyllum demersum HOM05D000289 ORTHO05D000208 6.7e-06 54.7 99 34.3
Ca_10958_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 6.7e-06 54.7 101 37.6
Ca_29633_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 6.7e-06 54.7 101 37.6
Thhalv10019125m.g Eutrema salsugineum HOM05D000289 ORTHO05D000208 6.7e-06 54.7 114 29.8
Glyma.08G019300 Glycine max HOM05D000289 ORTHO05D000208 6.7e-06 54.7 102 36.3
Nn4g23951 Nelumbo nucifera HOM05D000289 ORTHO05D000208 6.7e-06 54.7 99 34.3
PSO017G0551 Papaver somniferum HOM05D000289 ORTHO05D000208 6.7e-06 54.7 134 32.1
Phvul.007G031700 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 6.7e-06 54.7 113 29.2
TAR374G0676 Trochodendron aralioides HOM05D000289 ORTHO05D000208 6.7e-06 54.7 102 36.3
MSTRG.8693 Avicennia marina HOM05D000289 ORTHO05D000208 8.7e-06 54.3 102 34.3
Cpa.g.sc11.62 Carica papaya HOM05D000289 ORTHO05D000208 8.7e-06 54.3 99 37.4
Cpa.g.sc3.8 Carica papaya HOM05D000289 ORTHO05D000208 8.7e-06 54.3 102 36.3
Ciclev10021801m.g Citrus clementina HOM05D000289 ORTHO05D000208 8.7e-06 54.3 100 38.0
Lj4g0019956 Lotus japonicus HOM05D000289 ORTHO05D000208 8.7e-06 54.3 98 31.6
Sed0027643 Sechium edule HOM05D000289 ORTHO05D000208 8.7e-06 54.3 113 30.1
SGA_v2.0_scaffold36G14562 Striga asiatica HOM05D000289 ORTHO05D000208 8.7e-06 54.3 107 30.8
SGA_v2.0_scaffold38G15001 Striga asiatica HOM05D000289 ORTHO05D000208 8.7e-06 54.3 112 30.4
SGA_v2.0_scaffold44G16762 Striga asiatica HOM05D000289 ORTHO05D000208 8.7e-06 54.3 102 35.3
TAR009G0001 Trochodendron aralioides HOM05D000289 ORTHO05D000208 8.7e-06 54.3 102 36.3
VMungo0720G1179 Vigna mungo HOM05D000289 ORTHO05D000208 8.7e-06 54.3 113 27.4


User provided reference genes

Program Settings