Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.3e-53 211.5 109 100.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.4e-46 189.5 109 88.1
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.4e-46 189.5 103 92.2
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.8e-46 189.1 108 88.0
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 2.3e-46 188.7 103 93.2
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 5.2e-46 187.6 103 91.3
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 8.8e-46 186.8 103 91.3
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 8.8e-46 186.8 103 91.3
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.5e-45 186.0 103 90.3
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 4.4e-45 184.5 106 89.6
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 5.7e-45 184.1 103 89.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 7.4e-45 183.7 103 90.3
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 7.4e-45 183.7 103 90.3
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 7.4e-45 183.7 102 90.2
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 9.7e-45 183.3 103 88.3
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.3e-44 183.0 103 89.3
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.3e-44 183.0 103 89.3
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.7e-44 182.6 103 88.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 2.2e-44 182.2 109 86.2
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.8e-44 181.8 102 89.2
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-43 179.5 103 88.3
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.1e-40 169.9 103 81.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.9e-40 169.1 103 80.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.9e-40 169.1 103 80.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 2.5e-40 168.7 103 79.6
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 3.2e-40 168.3 103 81.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 4.2e-40 167.9 102 78.4
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 7.2e-40 167.2 99 85.9
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 7.2e-40 167.2 103 79.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 9.4e-40 166.8 103 79.6
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.2e-39 166.4 104 79.8
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 2.7e-39 165.2 103 79.6
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.7e-39 165.2 103 78.6
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 8.0e-39 163.7 103 79.6
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 1.0e-38 163.3 103 79.6
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.4e-38 162.9 103 79.6
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.4e-38 162.9 103 75.7
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.8e-38 162.5 108 72.2
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.3e-38 162.2 103 78.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.3e-38 162.2 103 76.7
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.3e-38 162.2 101 78.2
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 4.0e-38 161.4 103 77.7
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 5.2e-38 161.0 102 75.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 6.7e-38 160.6 103 75.7
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 8.8e-38 160.2 100 80.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 8.8e-38 160.2 100 80.0
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.2e-37 159.8 103 77.7
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.5e-37 159.5 103 74.8
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.5e-37 159.5 103 79.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.0e-37 159.1 103 77.7
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 2.6e-37 158.7 103 76.7
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 3.3e-37 158.3 103 76.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 3.3e-37 158.3 102 74.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 3.3e-37 158.3 103 75.7
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.3e-37 158.3 103 78.6
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 5.7e-37 157.5 103 76.7
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 5.7e-37 157.5 104 73.1
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 5.7e-37 157.5 103 74.8
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 7.5e-37 157.1 102 75.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 7.5e-37 157.1 100 74.0
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.7e-37 156.8 100 77.0
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 9.7e-37 156.8 103 74.8
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.3e-36 156.4 103 74.8
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.7e-36 156.0 98 76.5
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.2e-36 155.6 102 76.5
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.2e-36 155.6 102 75.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 3.7e-36 154.8 103 73.8
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 4.8e-36 154.5 103 73.8
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 4.8e-36 154.5 94 78.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 6.3e-36 154.1 103 72.8
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 6.3e-36 154.1 105 71.4
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 8.2e-36 153.7 99 75.8
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.1e-35 153.3 103 74.8
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.8e-35 152.5 102 72.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.8e-35 152.5 99 73.7
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 2.4e-35 152.1 103 72.8
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 3.1e-35 151.8 94 77.7
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 4.1e-35 151.4 103 73.8
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 7.0e-35 150.6 102 73.5
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.2e-34 149.8 97 74.2
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.6e-34 149.4 99 72.7
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.6e-34 149.4 99 71.7
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.0e-34 149.1 103 71.8
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.7e-34 148.7 103 71.8
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 3.5e-34 148.3 100 74.0
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 3.5e-34 148.3 103 70.9
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 3.5e-34 148.3 103 70.9
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.5e-34 147.9 100 72.0
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 4.5e-34 147.9 103 68.0
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.0e-33 146.7 102 70.6
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.0e-33 146.7 105 69.5
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.0e-33 146.7 103 69.9
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.3e-33 146.4 99 72.7
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 3.8e-33 144.8 103 68.9
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 5.0e-33 144.4 103 68.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 8.5e-33 143.7 103 68.0
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 8.5e-33 143.7 103 68.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.1e-32 143.3 102 68.6
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.5e-32 142.9 101 67.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.5e-32 142.9 99 71.7
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.9e-32 142.5 100 71.0
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.9e-32 142.5 99 70.7
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.9e-32 142.5 99 71.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 2.5e-32 142.1 100 67.0
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 3.2e-32 141.7 100 69.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 4.2e-32 141.4 101 67.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.2e-32 141.4 101 67.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.2e-32 141.4 101 67.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 4.2e-32 141.4 99 71.7
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 5.5e-32 141.0 101 66.3
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 7.2e-32 140.6 103 69.9
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-31 139.8 101 66.3
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.1e-31 139.0 98 70.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 2.1e-31 139.0 98 70.4
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.6e-31 138.3 103 67.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 2.3e-30 135.6 96 68.8
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 2.3e-30 135.6 98 68.4
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.0e-30 135.2 99 71.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 8.8e-30 133.7 99 70.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-29 132.9 99 70.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-28 129.8 99 69.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-28 129.8 99 69.7
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 5.9e-26 120.9 103 68.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.9e-24 115.9 160 43.1
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 3.3e-24 115.2 62 88.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.3e-24 115.2 105 61.9
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-24 114.8 104 62.5
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 9.5e-24 113.6 83 63.9
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.1e-23 112.5 74 70.3
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 6.8e-22 107.5 72 69.4
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 4.4e-21 104.8 69 66.7
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.8e-21 103.6 69 68.1
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 9.8e-21 103.6 73 63.0
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 8.3e-20 100.5 71 66.2
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.4e-19 99.8 73 60.3
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.8e-19 99.4 73 58.9
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.4e-19 99.0 85 57.6
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 2.4e-19 99.0 86 60.5
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.2e-19 97.1 90 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.3e-17 93.2 84 57.1
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.0e-14 81.6 98 51.0
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 6.8e-14 80.9 75 60.0
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.2e-13 80.1 87 48.3
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 9.8e-13 77.0 54 68.5
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 6.6e-09 64.3 69 43.5
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 1.4e-06 56.6 85 45.9
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.8e-06 54.3 101 34.7


User provided reference genes

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