Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.6e-67 259.2 126 100.0
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-66 256.5 126 98.4
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.0e-66 256.5 126 98.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.8e-66 255.8 126 97.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.8e-66 255.8 126 98.4
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.8e-66 255.8 126 98.4
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.8e-66 255.8 126 97.6
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.3e-66 255.4 126 97.6
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.0e-66 255.0 126 97.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.0e-66 255.0 126 97.6
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.8e-66 253.8 126 97.6
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.2e-65 253.1 126 96.8
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.2e-65 253.1 126 96.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-65 252.7 126 96.8
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.5e-65 252.7 126 96.8
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.5e-65 252.7 126 96.8
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 7.5e-65 250.4 126 96.0
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 3.7e-64 248.1 126 96.0
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 4.9e-64 247.7 126 95.2
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 6.3e-64 247.3 126 96.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 8.3e-64 246.9 127 96.1
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.8e-63 245.7 126 95.2
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 90.5
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 92.1
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 92.1
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 89.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 91.3
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 89.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 86.5
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 86.5
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 87.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 87.3
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 88.1
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 86.5
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 87.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 88.1
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 86.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 86.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 87.3
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 85.7
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 85.7
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 85.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 87.3
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 88.1
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 88.1
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 88.0
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 86.4
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.3e-58 228.8 125 85.6
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.3e-58 228.8 124 86.3
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 87.3
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 87.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 88.1
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 85.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.0e-58 228.0 127 87.4
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 84.9
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 84.9
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 5.2e-58 227.6 127 86.6
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 85.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 6.8e-58 227.3 125 84.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 86.5
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.2e-57 226.5 125 84.0
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 84.9
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 84.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 84.1
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 86.5
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.6e-57 225.3 124 85.5
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 84.1
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 85.7
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 84.1
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 5.7e-57 224.2 114 89.5
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 5.7e-57 224.2 127 87.4
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 83.3
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 81.7
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 85.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 84.1
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 83.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 83.3
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 84.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.9e-56 221.9 125 81.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.9e-56 221.9 125 81.6
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 8.3e-56 220.3 124 82.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 84.1
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 82.5
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.4e-55 219.5 127 83.5
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 84.1
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.4e-55 218.8 140 75.7
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 84.1
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 84.1
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 4.1e-55 218.0 126 82.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.2e-55 216.9 125 83.2
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.7
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-54 216.1 125 83.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 81.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 84.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 81.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.5e-54 214.9 112 93.8
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 5.9e-54 214.2 126 81.7
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.9e-54 214.2 112 90.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 78.6
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.0e-53 213.4 107 97.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.9e-53 211.5 112 92.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 81.0
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.3e-52 208.4 126 74.6
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.8e-51 205.3 124 79.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 3.6e-51 204.9 126 75.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 8.0e-51 203.8 126 76.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.0e-49 199.1 107 88.8
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 87.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 87.9
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.7e-48 196.1 126 75.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.9e-48 195.3 107 88.8
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 4.9e-48 194.5 107 86.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.4e-47 192.2 126 69.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 85.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 85.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 9.2e-47 190.3 107 84.1
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.2e-46 189.9 107 86.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.7e-46 188.7 93 90.3
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 3.5e-46 188.3 107 84.1
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 3.5e-46 188.3 94 90.4
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.0e-46 187.6 107 83.2
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.3e-45 186.4 94 89.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.3e-45 186.4 104 85.6
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.2e-43 179.9 107 77.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 5.2e-42 174.5 136 67.6
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 3.2e-39 165.2 122 63.9
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.9e-37 158.3 126 65.1
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.6e-37 157.5 124 66.1
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 9.5e-36 153.7 126 65.1
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.4e-34 149.8 141 58.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 2.0e-33 146.0 75 85.3
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.9e-32 142.1 101 62.4
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.3e-29 133.3 115 56.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 80 78.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.6e-29 131.0 75 85.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 6.2e-27 124.4 126 54.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-26 122.9 79 70.9
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.8e-25 117.9 86 68.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 9.9e-25 117.1 91 57.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-23 113.6 86 65.1
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 5.4e-23 111.3 66 77.3
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.6e-22 109.8 88 67.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-22 109.8 65 76.9
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 2.7e-22 109.0 63 81.0
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 4.6e-22 108.2 75 68.0
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-18 95.1 97 53.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 3.4e-17 92.0 75 65.3
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 4.4e-17 91.7 72 65.3
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 7.6e-17 90.9 78 52.6
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 8.4e-16 87.4 94 46.8
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.6e-14 81.6 43 86.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 4.5e-09 65.1 45 73.3
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.1e-07 60.5 42 76.2
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 6.0e-06 54.7 120 35.0


User provided reference genes

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