Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 2.5e-95 352.1 174 100.0
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 9.3e-82 307.0 175 88.6
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 4.6e-81 304.7 174 88.5
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 8.7e-80 300.4 175 87.4
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 2.5e-79 298.9 172 87.2
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 5.6e-79 297.7 177 85.9
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 2.4e-77 292.4 174 85.1
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 2.2e-75 285.8 175 84.0
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 1.1e-74 283.5 176 83.0
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 1.1e-74 283.5 176 83.0
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 6.0e-73 277.7 175 82.9
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 6.0e-73 277.7 175 82.9
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 3.0e-72 275.4 173 82.7
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 2.5e-71 272.3 174 81.0
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 3.3e-71 271.9 174 81.0
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 3.3e-71 271.9 174 81.0
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 5.5e-66 254.6 179 74.9
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 3.4e-52 208.8 174 67.2
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 3.4e-52 208.8 174 67.2
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.7e-41 172.6 178 55.6
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 5.2e-40 168.3 178 54.5
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 8.2e-38 161.0 177 53.7
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 1.2e-36 157.1 185 49.7
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 1.6e-36 156.8 172 51.2
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 1.6e-36 156.8 174 52.3
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.6e-36 156.8 177 53.7
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 5.9e-36 154.8 181 51.9
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.0e-35 154.1 174 54.0
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 1.3e-35 153.7 175 52.6
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 1.7e-35 153.3 176 51.1
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.2e-35 152.9 175 50.9
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 2.9e-35 152.5 174 52.3
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 3.8e-35 152.1 175 53.1
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 5.0e-35 151.8 173 50.9
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 5.0e-35 151.8 174 51.7
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 6.5e-35 151.4 173 54.3
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 1.9e-34 149.8 178 51.7
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 3.2e-34 149.1 174 49.4
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 3.2e-34 149.1 178 50.6
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 5.5e-34 148.3 174 49.4
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 7.2e-34 147.9 178 52.2
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 7.2e-34 147.9 180 50.0
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.2e-33 147.1 191 49.2
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 1.6e-33 146.7 146 55.5
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 1.4e-32 143.7 181 49.2
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 6.8e-32 141.4 187 48.1
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 1.2e-31 140.6 174 50.0
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 2.0e-31 139.8 171 52.0
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 2.0e-31 139.8 174 51.1
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 2.6e-31 139.4 177 49.2
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 2.6e-31 139.4 177 49.2
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 2.6e-31 139.4 176 49.4
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 2.6e-31 139.4 176 50.6
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 9.8e-31 137.5 98 69.4
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 1.7e-30 136.7 171 50.3
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 2.2e-30 136.3 174 48.9
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 2.8e-30 136.0 188 45.7
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 2.8e-30 136.0 171 50.3
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 8.3e-30 134.4 96 71.9
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 1.1e-29 134.0 171 49.1
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 1.8e-29 133.3 175 47.4
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 3.1e-29 132.5 181 45.9
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 9.1e-29 131.0 177 45.2
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 9.1e-29 131.0 179 48.0
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 2.0e-28 129.8 175 50.3
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 2.7e-28 129.4 148 52.0
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 1.3e-27 127.1 178 45.5
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 2.9e-27 125.9 178 46.1
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 2.9e-27 125.9 181 44.2
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 3.8e-27 125.6 177 49.7
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 3.8e-27 125.6 175 46.9
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 6.5e-27 124.8 181 45.9
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 6.5e-27 124.8 175 49.1
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 6.5e-27 124.8 175 44.0
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.5e-26 122.9 96 65.6
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 2.5e-26 122.9 175 44.6
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 2.5e-26 122.9 92 67.4
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 7.2e-26 121.3 175 45.1
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.2e-25 120.6 174 48.3
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.2e-25 120.6 177 48.0
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.2e-25 120.6 174 48.3
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 1.6e-25 120.2 145 50.3
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.1e-25 119.8 174 48.3
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 3.0e-24 115.9 178 42.7
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.2e-23 114.0 173 42.8
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 1.5e-23 113.6 177 42.9
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 9.8e-23 110.9 169 43.2
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 2.2e-22 109.8 95 62.1
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 3.7e-22 109.0 81 70.4
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 2.4e-21 106.3 171 44.4
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 3.1e-21 105.9 171 43.3
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 5.4e-21 105.1 108 55.6
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.6e-20 103.6 55 89.1
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 1.6e-20 103.6 181 39.8
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 1.6e-20 103.6 93 59.1
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 7.8e-20 101.3 252 34.5
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.0e-19 100.9 144 41.7
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 5.6e-18 95.1 72 69.4
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 3.6e-17 92.4 145 42.1
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 1.4e-16 90.5 66 65.2
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 2.0e-15 86.7 147 40.1
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 2.0e-15 86.7 147 39.5
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 7.5e-15 84.7 72 59.7
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 7.5e-15 84.7 152 38.8
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 7.5e-15 84.7 152 40.8
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 7.0e-13 78.2 147 43.5
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 1.6e-12 77.0 133 41.4
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 2.7e-12 76.3 44 81.8
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 3.5e-12 75.9 67 55.2
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 1.7e-11 73.6 152 38.2
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 1.1e-10 70.9 157 35.7
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 1.1e-10 70.9 76 48.7
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 2.8e-09 66.2 188 32.4
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 5.2e-08 62.0 71 47.9
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 6.8e-08 61.6 147 34.7
BcaB07g30436 Brassica carinata HOM05D000059 ORTHO05D091085 5.8e-07 58.5 149 34.2


User provided reference genes

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