Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.4e-174 614.0 314 100.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 3.2e-157 558.5 314 87.3
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.5e-141 505.8 315 81.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-141 505.8 315 81.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.6e-140 503.1 315 81.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-137 493.4 314 77.7
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.2e-135 486.9 318 75.8
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 7.7e-135 484.2 316 77.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.8e-134 481.9 316 78.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.1e-133 480.3 314 75.8
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.4e-133 479.9 316 77.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 7.2e-133 477.6 317 73.5
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.0e-131 473.8 319 75.2
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.8e-131 473.0 315 77.1
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 5.1e-131 471.5 315 75.9
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 6.7e-131 471.1 315 76.8
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.9e-118 429.1 337 65.3
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 3.4e-114 415.6 335 64.8
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.6e-101 371.7 322 59.0
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.6e-98 362.8 327 57.8
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.6e-98 362.8 326 58.3
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 3.7e-97 359.0 325 58.2
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.7e-97 359.0 344 57.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 6.4e-97 358.2 332 56.9
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 2.4e-96 356.3 320 56.6
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 3.2e-96 355.9 323 56.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-96 355.5 332 56.3
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-96 355.5 332 56.3
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 7.0e-96 354.8 323 56.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.0e-96 354.8 320 57.2
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 9.2e-96 354.4 327 57.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.6e-95 353.6 322 57.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.6e-95 353.6 331 55.9
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.6e-95 353.6 331 55.9
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.6e-95 352.1 325 57.2
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.6e-95 352.1 320 57.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.9e-95 351.7 320 56.9
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.0e-94 350.9 329 57.1
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.7e-94 350.1 330 57.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 3.0e-94 349.4 328 56.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.0e-94 348.6 321 56.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 6.6e-94 348.2 327 56.6
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 6.6e-94 348.2 329 54.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.1e-93 347.4 333 55.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.9e-93 346.7 327 55.4
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.9e-93 346.7 332 54.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.2e-92 344.0 319 54.9
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.6e-92 343.6 321 56.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.1e-92 343.2 317 56.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.7e-92 342.0 349 51.9
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.7e-92 342.0 325 56.0
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.0e-92 341.3 332 53.3
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.4e-91 340.5 331 54.7
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.4e-91 340.5 331 55.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.8e-91 340.1 329 54.7
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.1e-91 339.3 336 53.9
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 5.2e-91 338.6 344 52.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.4e-90 335.9 326 53.7
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.4e-90 335.5 321 54.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.3e-89 334.0 323 52.9
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-89 333.6 361 49.6
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.2e-89 333.2 254 62.6
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.4e-89 331.6 336 53.0
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 6.4e-89 331.6 331 53.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.4e-88 330.5 264 59.8
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.4e-88 330.5 319 53.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.4e-88 328.6 355 50.7
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.7e-87 326.2 311 54.3
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 4.6e-87 325.5 254 61.8
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.0e-86 324.3 329 52.6
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.0e-86 324.3 344 49.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.0e-86 324.3 323 52.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-86 323.9 319 52.0
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.3e-86 323.9 327 52.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.3e-86 323.9 259 60.6
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.3e-86 323.2 275 57.8
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.0e-86 322.8 389 46.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 8.6e-86 321.2 342 51.5
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.9e-85 320.1 314 53.5
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 4.3e-85 318.9 269 60.2
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.2e-84 317.4 268 60.1
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.1e-84 316.6 305 54.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.8e-84 316.2 267 60.3
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 8.1e-84 314.7 324 53.1
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.1e-83 314.3 348 49.7
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.4e-83 313.9 270 57.4
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.1e-83 312.8 322 49.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.2e-83 312.0 330 49.7
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.2e-82 310.8 320 51.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.5e-82 308.1 336 50.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.5e-82 308.1 254 57.5
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.2e-81 306.6 335 49.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.9e-81 306.2 389 45.0
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.7e-81 305.8 344 49.1
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 3.7e-81 305.8 329 48.3
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.4e-80 303.9 331 48.9
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.4e-80 303.9 251 59.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 3.2e-80 302.8 314 51.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-79 300.1 285 55.1
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.8e-79 298.1 324 50.3
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 3.3e-77 292.7 285 54.7
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-76 290.4 331 48.6
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.1e-76 290.0 331 47.7
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 3.6e-76 289.3 241 61.0
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 4.7e-76 288.9 195 65.6
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.9e-75 284.6 288 53.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.8e-74 282.0 377 43.2
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-72 277.3 210 61.9
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.4e-72 275.4 207 62.3
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.7e-71 273.1 260 51.2
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.7e-71 273.1 315 45.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 8.4e-65 251.5 155 71.6
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.4e-64 250.8 318 42.5
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.5e-63 246.1 386 39.1
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 6.6e-62 241.9 185 61.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 4.8e-60 235.7 322 42.9
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.1e-54 215.7 259 45.6
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.9e-53 213.8 198 50.0
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.3e-52 211.1 262 40.8
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.1e-52 210.3 163 57.7
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.2e-52 208.8 174 58.0
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.5e-45 186.8 354 33.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.8e-44 183.3 179 54.7
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.1e-37 161.4 150 55.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-35 154.8 125 58.4
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.3e-30 137.9 311 31.5
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.3e-29 133.3 152 45.4
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.0e-26 124.0 83 66.3
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.5e-24 117.1 120 61.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-20 104.8 87 55.2
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 9.1e-19 98.6 93 61.3
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.9e-18 95.9 116 50.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 2.9e-17 93.6 88 51.1
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.2e-14 82.8 57 56.1
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-13 81.6 71 59.2
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-10 71.6 53 66.0
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.0e-09 66.2 100 39.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.4e-08 62.0 45 60.0


User provided reference genes

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