Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 9.2e-223 776.5 385 100.0
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 3.0e-181 638.6 385 82.9
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 8.7e-181 637.1 385 83.6
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 1.4e-178 629.8 385 81.8
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 6.9e-178 627.5 384 81.2
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 6.4e-176 620.9 385 82.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.5e-172 609.0 379 81.8
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 9.6e-172 607.1 381 82.4
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.1e-170 602.1 384 81.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 5.5e-167 591.3 370 81.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 7.1e-167 590.9 370 80.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-165 586.6 373 81.8
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 4.3e-164 581.6 395 73.2
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 4.6e-158 561.6 395 72.9
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.8e-141 506.5 395 62.0
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 2.8e-139 499.2 395 61.0
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 6.3e-139 498.0 386 62.2
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 2.4e-138 496.1 400 62.8
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 7.0e-138 494.6 395 60.5
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 7.7e-137 491.1 400 60.0
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.0e-136 490.7 401 59.6
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 2.5e-135 486.1 400 58.8
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 2.5e-135 486.1 395 60.3
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 3.2e-135 485.7 400 59.5
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 9.4e-135 484.2 397 60.5
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 2.7e-134 482.6 400 59.8
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 8.0e-134 481.1 403 60.5
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 5.2e-133 478.4 386 60.6
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 1.5e-132 476.9 401 59.6
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 4.4e-132 475.3 397 59.7
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 7.5e-132 474.6 399 60.9
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 2.8e-131 472.6 397 58.9
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 1.4e-130 470.3 403 60.0
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 1.8e-130 469.9 397 58.7
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 3.1e-130 469.2 401 59.4
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 1.2e-129 467.2 395 58.2
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 5.9e-129 464.9 398 58.5
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 7.7e-129 464.5 395 57.7
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 4.2e-127 458.8 401 55.9
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 7.2e-127 458.0 399 57.4
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 2.7e-126 456.1 395 58.2
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 3.6e-126 455.7 399 57.1
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 1.0e-125 454.1 402 56.7
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 6.8e-125 451.4 395 57.2
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 1.2e-124 450.7 395 57.2
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 2.0e-124 449.9 401 55.6
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 2.0e-124 449.9 398 58.5
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.5e-124 448.0 395 56.7
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 7.5e-124 448.0 407 55.3
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.3e-123 447.2 400 56.0
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.7e-123 445.7 395 56.7
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 2.4e-122 443.0 384 57.3
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.6e-121 440.3 408 55.9
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 2.0e-121 439.9 400 55.8
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.0e-121 439.9 400 57.5
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 3.5e-121 439.1 401 55.4
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 4.5e-121 438.7 403 57.1
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 7.7e-121 438.0 400 56.8
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 1.0e-120 437.6 400 56.5
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 1.3e-120 437.2 403 55.6
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 6.5e-120 434.9 401 54.9
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 8.6e-120 434.5 401 54.6
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 1.1e-119 434.1 402 55.0
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 2.5e-119 433.0 393 56.0
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 4.2e-119 432.2 376 57.7
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.2e-118 430.6 393 55.0
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 2.1e-118 429.9 396 55.1
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 2.6e-116 422.9 396 53.8
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 9.8e-116 421.0 394 55.1
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 3.1e-114 416.0 396 52.5
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 3.5e-113 412.5 400 54.0
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 5.9e-113 411.8 398 53.0
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 3.3e-111 406.0 395 54.2
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 3.3e-111 406.0 390 53.1
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 1.8e-109 400.2 394 53.0
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 2.9e-107 392.9 395 52.2
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.1e-101 374.4 398 49.2
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 4.4e-100 369.0 390 50.3
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 1.0e-96 357.8 278 63.3
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 2.4e-90 336.7 400 46.0
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 7.8e-89 331.6 410 46.3
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.6e-86 323.9 405 43.7
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.2e-84 317.8 338 51.5
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 6.4e-83 312.0 377 47.7
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 7.3e-71 271.9 310 48.4
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 8.1e-70 268.5 211 62.6
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 9.3e-66 255.0 270 56.3
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 2.3e-64 250.4 149 73.8
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 8.7e-64 248.4 387 36.7
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 6.9e-61 238.8 405 34.8
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.9e-59 233.4 220 53.2
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 3.8e-59 233.0 385 35.6
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 2.1e-57 227.3 204 57.8
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 3.5e-57 226.5 218 54.1
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 1.2e-52 211.5 208 50.5
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.5e-52 211.1 186 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 2.2e-51 207.2 338 36.1
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 7.4e-47 192.2 197 50.3
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 7.4e-47 192.2 197 50.3
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 2.2e-46 190.7 429 29.6
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 2.8e-46 190.3 187 52.4
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 2.8e-46 190.3 128 67.2
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 8.2e-46 188.7 179 54.2
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 1.5e-44 184.5 216 45.8
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 2.9e-43 180.3 180 53.9
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-42 177.9 217 52.5
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 2.5e-42 177.2 194 49.5
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.4e-40 171.4 104 73.1
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 3.0e-40 170.2 123 64.2
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.0e-35 155.2 146 56.8
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 6.9e-29 132.5 140 47.1
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 1.2e-25 121.7 175 41.1
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 1.0e-24 118.6 147 44.2
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.5e-23 114.8 79 68.4
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 4.8e-22 109.8 105 49.5
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.0e-20 104.4 89 61.8
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 3.2e-18 97.1 74 59.5
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.5e-15 85.9 172 36.0
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 4.8e-14 83.2 370 25.1
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.1e-13 80.1 51 68.6
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 1.5e-10 71.6 100 42.0
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.6e-09 68.2 356 25.0
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 8.8e-08 62.4 148 31.1
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 7.5e-07 59.3 33 72.7
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 4.8e-06 56.6 74 48.6


User provided reference genes

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