Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.5e-62 242.7 119 100.0
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 9.0e-52 206.8 137 79.6
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 2.3e-47 192.2 139 77.0
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 2.3e-47 192.2 139 77.0
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 3.0e-47 191.8 120 81.7
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.1e-47 191.0 120 80.8
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 5.1e-47 191.0 120 80.8
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.1e-45 185.7 133 73.7
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 3.6e-45 184.9 120 80.0
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 9.0e-44 180.3 137 73.7
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 9.0e-44 180.3 137 73.7
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 7.6e-35 150.6 123 70.7
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 2.5e-25 119.0 99 62.6
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 4.6e-24 114.8 131 52.7
Thhalv10027223m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.0e-23 113.6 134 53.7
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.0e-23 113.6 137 54.7
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 6.7e-23 110.9 131 51.1
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.1e-22 110.2 131 52.7
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.6e-21 106.3 134 51.5
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 3.7e-21 105.1 131 49.6
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 3.7e-21 105.1 131 49.6
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 3.7e-21 105.1 131 49.6
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 4.8e-21 104.8 111 55.0
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 5.3e-20 101.3 111 55.0
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 5.3e-20 101.3 111 54.1
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 5.3e-20 101.3 111 54.1
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 5.3e-20 101.3 130 51.5
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 6.9e-20 100.9 111 54.1
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 6.9e-20 100.9 111 54.1
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 6.9e-20 100.9 111 54.1
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 4.5e-19 98.2 114 55.3
Sp7g35360 Schrenkiella parvula HOM05D009364 ORTHO05D004599 5.9e-19 97.8 131 51.1
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 4.5e-11 71.6 109 40.4
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 5.9e-11 71.2 136 39.0
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.0e-10 70.5 148 36.5
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 1.0e-10 70.5 160 36.2
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.9e-10 68.9 125 36.0
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.8e-10 68.6 123 36.6
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.8e-10 68.6 136 36.0
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 5.0e-10 68.2 125 35.2
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 5.0e-10 68.2 176 33.5
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.5e-10 67.8 136 36.0
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 8.5e-10 67.4 127 33.1
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.1e-09 67.0 178 30.9
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.1e-09 67.0 136 35.3
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.1e-09 67.0 141 36.9
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 1.4e-09 66.6 169 32.0
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 1.9e-09 66.2 139 31.7
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.5e-09 65.9 135 36.3
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 2.5e-09 65.9 117 36.8
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.2e-09 65.5 135 34.8
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.2e-09 65.5 135 34.8
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 5.5e-09 64.7 156 31.4
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 5.5e-09 64.7 58 53.4
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 7.2e-09 64.3 69 52.2
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 9.4e-09 63.9 60 53.3
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.6e-08 63.2 54 55.6
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 1.6e-08 63.2 142 32.4
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 2.1e-08 62.8 149 28.9
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.1e-08 62.8 149 28.9
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.1e-08 62.8 148 28.4
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.1e-08 62.8 148 28.4
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.1e-08 62.8 69 49.3
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 3.6e-08 62.0 155 32.9
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 4.7e-08 61.6 84 44.0
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.7e-08 61.6 124 34.7
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 6.1e-08 61.2 70 45.7
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.1e-08 61.2 84 44.0
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.0e-07 60.5 146 33.6
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.4e-07 60.1 101 37.6
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.4e-07 60.1 148 29.7
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.4e-07 60.1 141 34.0
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.8e-07 59.7 59 49.2
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.8e-07 59.7 43 55.8
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 1.8e-07 59.7 85 45.9
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.9e-07 58.5 89 34.8
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 5.1e-07 58.2 73 42.5
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 5.1e-07 58.2 143 30.8
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 5.1e-07 58.2 110 36.4
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 6.7e-07 57.8 113 33.6
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 6.7e-07 57.8 113 34.5
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 8.8e-07 57.4 173 30.1
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 1.1e-06 57.0 55 49.1
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 1.5e-06 56.6 70 38.6
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 1.5e-06 56.6 42 54.8
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 2.6e-06 55.8 128 32.0
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 2.6e-06 55.8 118 36.4
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.3e-06 55.5 145 31.7
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 3.3e-06 55.5 71 40.8
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 3.3e-06 55.5 70 45.7
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.4e-06 55.1 52 50.0
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 4.4e-06 55.1 52 50.0
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 5.7e-06 54.7 104 40.4
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 5.7e-06 54.7 131 33.6
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 5.7e-06 54.7 53 47.2


User provided reference genes

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