Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 2.2e-246 855.1 412 100.0
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 2.1e-233 812.0 412 94.4
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 7.8e-228 793.5 413 93.0
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 3.6e-225 784.6 409 92.9
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 3.4e-223 778.1 394 94.9
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 4.4e-223 777.7 421 90.0
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 9.8e-223 776.5 409 92.4
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 2.9e-222 775.0 394 94.4
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 7.0e-221 770.4 410 91.7
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 3.0e-219 765.0 418 89.5
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 1.7e-214 749.2 414 89.1
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 2.4e-213 745.3 410 90.2
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 2.8e-201 705.3 413 82.1
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 7.1e-189 664.1 350 91.7
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 1.3e-169 600.1 399 70.4
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 5.5e-165 584.7 385 69.6
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 9.3e-165 583.9 385 70.1
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 3.0e-163 578.9 404 67.3
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 3.7e-161 572.0 382 67.5
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 4.1e-160 568.5 397 67.0
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 2.0e-159 566.2 384 67.7
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 5.9e-159 564.7 402 66.4
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 5.9e-159 564.7 383 67.4
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 1.0e-158 563.9 385 68.3
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 3.8e-158 562.0 417 64.5
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 8.5e-158 560.8 388 67.3
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 8.5e-158 560.8 413 63.7
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 1.4e-157 560.1 394 66.0
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 9.4e-157 557.4 416 63.5
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 1.4e-155 553.5 385 65.7
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 5.1e-155 551.6 417 61.9
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 8.8e-155 550.8 327 81.0
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 2.0e-154 549.7 413 63.0
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 2.0e-154 549.7 398 65.8
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 3.3e-154 548.9 415 63.6
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 4.3e-154 548.5 396 64.1
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 7.4e-154 547.7 382 65.2
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 4.8e-153 545.0 382 64.9
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 6.3e-153 544.7 386 64.8
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 6.3e-153 544.7 387 64.6
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 8.2e-153 544.3 385 66.0
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 1.4e-152 543.5 411 62.8
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 1.4e-152 543.5 411 62.8
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 1.8e-152 543.1 408 61.8
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 6.9e-152 541.2 382 64.4
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 1.2e-151 540.4 407 62.9
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 1.5e-151 540.0 389 63.5
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.4e-151 538.9 412 60.9
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 1.7e-150 536.6 402 61.9
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 3.8e-150 535.4 409 61.4
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 3.8e-150 535.4 384 64.8
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 5.0e-150 535.0 397 61.5
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 5.0e-150 535.0 384 64.8
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 1.4e-149 533.5 383 65.3
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 1.9e-149 533.1 403 61.3
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 5.5e-149 531.6 431 58.9
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 7.2e-149 531.2 404 60.9
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 4.7e-148 528.5 378 64.8
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 7.9e-148 527.7 395 63.3
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 3.9e-147 525.4 454 58.1
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 3.9e-147 525.4 389 63.2
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 6.7e-147 524.6 398 61.8
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 1.7e-145 520.0 391 62.7
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 8.2e-145 517.7 395 61.0
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 1.1e-144 517.3 381 62.5
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 7.0e-144 514.6 403 60.5
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 9.1e-144 514.2 350 68.0
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 5.0e-142 508.4 411 61.1
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 6.5e-142 508.1 412 59.5
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 8.5e-142 507.7 428 58.9
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 2.1e-140 503.1 375 63.5
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 5.2e-139 498.4 402 58.5
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 6.3e-137 491.5 402 57.5
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 3.1e-136 489.2 469 52.5
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 1.6e-132 476.9 384 57.0
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 1.8e-131 473.4 426 55.2
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 3.0e-131 472.6 334 64.1
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 6.3e-129 464.9 375 60.3
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 3.1e-128 462.6 383 57.2
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 1.5e-125 453.8 402 55.0
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 1.3e-121 440.7 352 59.4
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 2.3e-118 429.9 429 49.9
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 9.5e-117 424.5 352 58.2
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.1e-116 423.3 341 60.7
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 4.4e-114 415.6 411 53.8
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 1.2e-111 407.5 409 52.3
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.5e-109 400.6 290 65.2
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 2.7e-103 379.8 339 55.5
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 2.6e-98 363.2 394 47.5
Lj4C209T2 Lonicera japonica HOM05D006805 ORTHO05D008656 7.1e-88 328.6 254 61.0
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 3.9e-86 322.8 209 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1023 Anthoceros agrestis HOM05D006805 ORTHO05D001783 1.1e-85 321.2 388 44.1
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 1.1e-85 321.2 352 46.0
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 2.0e-82 310.5 429 44.3
AUR62004104 Chenopodium quinoa HOM05D006805 ORTHO05D008656 7.6e-82 308.5 223 62.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.4e-80 302.4 253 57.3
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.6e-79 300.8 186 78.0
Pp3c15_5920 Physcomitrium patens HOM05D006805 ORTHO05D008656 1.7e-78 297.4 405 39.0
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 3.0e-78 296.6 384 40.4
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 1.9e-77 293.9 385 43.9
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 1.6e-76 290.8 394 39.1
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 2.8e-68 263.5 407 37.3
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 9.0e-67 258.5 182 63.7
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 3.8e-65 253.1 206 55.3
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 1.1e-53 214.9 182 56.6
HanXRQChr12g0370271 Helianthus annuus HOM05D006805 ORTHO05D008656 7.4e-53 212.2 212 52.4
Lsat_1_v5_gn_2_78040 Lactuca sativa HOM05D006805 ORTHO05D008656 2.6e-50 203.8 221 48.4
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 2.7e-47 193.7 294 37.4
Dinv10224 Davidia involucrata HOM05D006805 ORTHO05D008656 2.8e-44 183.7 138 62.3
HanXRQChr09g0256121 Helianthus annuus HOM05D006805 ORTHO05D008656 6.3e-44 182.6 295 39.3
Glyma.16G133100 Glycine max HOM05D006805 ORTHO05D008656 3.1e-43 180.3 120 65.0
TPR.G21539 Trifolium pratense HOM05D000894 ORTHO05D001833 5.0e-41 172.9 126 60.3
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 2.2e-33 147.5 96 66.7
Glyma.10G129950 Glycine max HOM05D006805 ORTHO05D008656 1.8e-30 137.9 107 57.0
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 9.1e-27 125.6 132 49.2
EL10Ac7g17413 Beta vulgaris HOM05D006805 ORTHO05D008656 1.3e-25 121.7 112 48.2
MD02G1139100 Malus domestica HOM05D006805 ORTHO05D008656 6.3e-20 102.8 107 48.6
Aa31LG6G13240 Aethionema arabicum HOM05D006805 ORTHO05D008656 3.6e-15 87.0 66 77.3
A04p23820 Brassica napus HOM05D012902 ORTHO05D024573 6.1e-15 86.3 92 56.5
A06p33990 Brassica napus HOM05D012902 ORTHO05D024573 6.1e-15 86.3 47 91.5
BraA06t26332Z Brassica rapa HOM05D012902 ORTHO05D024573 6.1e-15 86.3 47 91.5
BraA08t35568Z Brassica rapa HOM05D012902 ORTHO05D024573 6.1e-15 86.3 47 91.5
HanXRQChr12g0370281 Helianthus annuus HOM05D006805 ORTHO05D008656 8.8e-14 82.4 77 50.6
BcaC07g40565 Brassica carinata HOM05D012902 ORTHO05D017621 4.8e-12 76.6 46 84.8
C08p35450 Brassica napus HOM05D012902 ORTHO05D017621 8.3e-12 75.9 56 75.0
BcaC09g50007 Brassica carinata HOM05D012902 ORTHO05D017621 3.5e-10 70.5 39 89.7
C01p30080 Brassica napus HOM05D012902 ORTHO05D017621 3.5e-10 70.5 39 89.7
BolC1t02952H Brassica oleracea HOM05D012902 ORTHO05D017621 3.5e-10 70.5 39 89.7
BolC6t37377H Brassica oleracea HOM05D012902 ORTHO05D017621 2.2e-09 67.8 57 66.7
C06p21890 Brassica napus HOM05D012902 ORTHO05D017621 2.9e-09 67.4 40 85.0
RcHm_v2.0_Chr2g0136281 Rosa chinensis HOM05D006805 ORTHO05D008656 7.2e-08 62.8 41 68.3


User provided reference genes

Program Settings