Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 2313.9 1195 100.0
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 2080.4 1215 89.1
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1956.8 1236 82.6
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1885.5 1196 83.4
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1883.2 1235 79.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1854.7 1206 80.3
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1853.2 1230 78.9
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1838.9 1187 82.1
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1778.8 1211 76.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1750.3 1228 76.5
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1739.2 1237 75.7
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1738.8 1235 76.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1679.1 1240 74.2
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1581.6 1032 79.7
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1538.9 1242 66.2
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1252.7 1263 53.6
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1251.1 1220 54.0
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1247.6 1263 53.5
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1219.1 1263 52.7
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1196.0 1251 51.8
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1192.2 1253 51.7
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1192.2 1253 52.4
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1191.8 1260 51.4
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1189.9 1251 51.6
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1189.5 1255 51.6
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1183.7 1262 51.0
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1181.8 1263 50.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1181.4 1251 52.0
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1176.4 1248 51.2
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1172.1 1245 51.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1168.7 1256 51.3
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1166.4 1245 52.9
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1165.6 1265 50.8
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1162.9 834 76.1
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1247 50.5
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1262 50.1
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1244 50.2
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1140.6 1248 50.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1132.9 1256 50.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1128.2 1258 49.1
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1126.3 1060 55.7
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1124.4 1265 48.8
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1114.8 1262 48.8
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1114.4 1217 50.5
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1280 48.7
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1103.6 1273 48.5
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1103.2 1258 48.3
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1101.7 1252 49.2
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1100.1 1252 48.3
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1100.1 1256 48.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1099.3 1237 47.7
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1094.3 1250 47.5
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1094.0 1262 48.2
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1090.1 1248 48.6
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1089.3 1251 48.4
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 1267 48.1
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1083.6 1249 48.6
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1081.6 1171 50.3
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1078.9 1252 49.4
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1078.5 1250 48.2
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1076.6 1253 47.6
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 1.6e-311 1073.2 1229 48.9
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 9.8e-311 1070.5 1257 47.0
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 1.1e-309 1067.0 1246 47.4
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 1.8e-309 1066.2 1242 48.3
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 1.2e-308 1063.5 1236 47.7
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 5.8e-308 1061.2 1246 47.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 2.1e-302 1042.7 1250 47.0
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 2.4e-301 1039.3 1252 46.6
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 8.9e-301 1037.3 1238 47.5
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 4.4e-300 1035.0 1246 47.4
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 1.2e-297 1026.9 1100 52.0
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 3.0e-296 1022.3 1244 45.7
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 1.1e-293 1013.8 1285 45.3
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 7.6e-292 1007.7 1224 45.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 4.9e-291 1005.0 1105 50.8
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 2.3e-288 996.1 1229 46.1
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 3.0e-288 995.7 1238 45.7
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 3.0e-288 995.7 1254 46.0
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 1.5e-287 993.4 1288 45.4
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 2.8e-286 989.2 1271 44.6
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.8e-285 986.5 1258 45.0
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 2.0e-284 983.0 1233 45.5
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.8e-284 981.5 1237 45.4
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 7.1e-282 974.5 1171 47.5
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 2.7e-281 972.6 1227 46.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 1.7e-275 953.4 859 58.8
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 4.9e-275 951.8 1011 51.5
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 1.1e-274 950.7 894 56.9
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 3.2e-274 949.1 1235 45.2
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 5.1e-272 941.8 928 54.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 3.6e-265 919.1 1225 43.5
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 2.3e-219 766.9 976 44.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.4e-213 747.7 1237 36.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 4.7e-209 732.6 1196 38.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.9e-206 723.4 962 44.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 7.8e-196 688.7 1105 37.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 6.0e-188 662.5 875 44.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 5.6e-186 656.0 891 42.6
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.8e-152 544.7 856 38.7
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.2e-150 537.7 565 52.2
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.1e-148 531.2 838 38.4
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.3e-147 527.7 771 40.2
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 9.7e-146 522.3 787 38.6
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 7.9e-140 502.7 689 42.4
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.4e-130 470.3 431 59.2
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.0e-123 447.6 638 40.9
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.3e-102 379.0 363 57.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.1e-101 375.9 544 40.1
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 2.5e-93 348.2 351 56.7
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 9.5e-93 346.3 340 57.9
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 3.1e-91 341.3 340 57.6
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.2e-87 329.3 236 69.1
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 2.7e-87 328.2 382 46.3
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 9.5e-77 293.1 457 37.6
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.8e-75 287.0 649 31.4
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 3.2e-72 278.1 474 34.2
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.1e-63 248.8 446 34.5
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-54 217.2 337 35.0
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 9.6e-53 213.4 372 37.4
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 5.7e-45 187.6 393 28.5
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.2e-44 184.1 295 38.3
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.2e-32 145.2 296 32.1
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 8.8e-30 137.1 328 33.8
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 4.3e-29 134.8 154 48.1
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 2.0e-18 99.4 404 26.2
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 7.7e-18 97.4 140 36.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 6.7e-14 84.3 148 35.1
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 7.4e-13 80.9 203 30.5
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 9.7e-13 80.5 104 39.4
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.8e-12 79.0 104 38.5
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 1.8e-11 76.3 104 38.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.7e-07 62.4 59 47.5
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 8.8e-06 57.4 241 22.8


User provided reference genes

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