Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 6.4e-84 313.9 146 100.0
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 1.2e-82 309.7 146 98.6
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 2.4e-75 285.4 146 89.0
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 7.8e-74 280.4 146 87.7
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 1.7e-73 279.3 146 86.3
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 2.3e-73 278.9 146 86.3
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 2.3e-73 278.9 146 86.3
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 1.2e-71 273.1 144 84.0
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 4.0e-70 268.1 146 82.2
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 6.9e-70 267.3 146 81.5
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 1.2e-69 266.5 146 81.5
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 1.2e-69 266.5 144 81.9
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 2.0e-69 265.8 146 81.5
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 2.0e-69 265.8 146 81.5
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 4.4e-69 264.6 144 81.9
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 5.8e-69 264.2 144 81.2
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 9.9e-69 263.5 146 82.2
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 9.9e-69 263.5 146 79.5
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 8.4e-68 260.4 146 78.8
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 8.4e-68 260.4 144 80.6
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 8.4e-68 260.4 146 79.5
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 1.1e-67 260.0 146 80.1
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 2.4e-67 258.8 144 79.9
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 3.2e-67 258.5 147 79.6
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 3.2e-67 258.5 144 79.9
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 4.2e-67 258.1 144 79.9
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 1.2e-66 256.5 148 79.1
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 1.6e-66 256.1 144 79.2
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 2.1e-66 255.8 146 78.1
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 2.1e-66 255.8 146 78.8
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 2.7e-66 255.4 144 79.9
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 3.5e-66 255.0 147 78.2
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 3.5e-66 255.0 147 78.2
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 3.5e-66 255.0 147 78.2
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 3.5e-66 255.0 147 78.2
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 4.6e-66 254.6 147 78.2
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 6.0e-66 254.2 144 78.5
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 6.0e-66 254.2 145 75.9
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 7.8e-66 253.8 147 78.2
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 7.8e-66 253.8 146 74.7
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 1.0e-65 253.4 146 77.4
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 1.0e-65 253.4 147 77.6
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 2.3e-65 252.3 146 76.0
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 2.3e-65 252.3 146 77.4
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 2.3e-65 252.3 146 77.4
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 3.0e-65 251.9 147 77.6
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 3.0e-65 251.9 146 76.0
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 3.0e-65 251.9 142 78.9
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 3.9e-65 251.5 147 76.9
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 3.9e-65 251.5 158 72.8
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 3.9e-65 251.5 146 76.7
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 3.9e-65 251.5 146 76.0
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 5.1e-65 251.1 146 77.4
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 6.6e-65 250.8 142 77.5
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 1.1e-64 250.0 147 76.2
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 1.1e-64 250.0 139 79.9
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 1.5e-64 249.6 147 76.2
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 1.9e-64 249.2 146 75.3
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 1.9e-64 249.2 147 76.9
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 1.9e-64 249.2 146 75.3
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 2.5e-64 248.8 144 79.2
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 2.5e-64 248.8 146 76.7
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 3.3e-64 248.4 144 75.7
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 3.3e-64 248.4 144 75.7
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 4.3e-64 248.1 147 76.9
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 4.3e-64 248.1 146 76.7
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 5.6e-64 247.7 147 76.9
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 5.6e-64 247.7 146 74.7
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 5.6e-64 247.7 146 74.7
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 7.3e-64 247.3 144 74.3
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 7.3e-64 247.3 148 74.3
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 7.3e-64 247.3 146 74.7
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 1.6e-63 246.1 146 75.3
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 1.6e-63 246.1 146 75.3
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 2.1e-63 245.7 143 76.9
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 2.1e-63 245.7 148 75.7
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 4.8e-63 244.6 137 78.8
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 4.8e-63 244.6 141 76.6
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 6.2e-63 244.2 146 76.0
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 8.1e-63 243.8 142 73.2
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 1.1e-62 243.4 146 74.0
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.1e-62 243.4 143 76.2
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 1.4e-62 243.0 143 76.2
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 3.1e-62 241.9 144 75.0
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 4.0e-62 241.5 144 75.7
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 5.3e-62 241.1 143 74.8
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 9.0e-62 240.4 143 74.8
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 9.9e-61 236.9 167 66.5
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 9.9e-61 236.9 144 72.9
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 1.3e-60 236.5 146 71.2
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 2.9e-60 235.3 140 74.3
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 2.4e-59 232.3 140 73.6
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 1.2e-58 229.9 140 71.4
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 2.7e-58 228.8 140 71.4
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 4.6e-58 228.0 165 66.1
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 6.0e-58 227.6 144 69.4
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 1.0e-57 226.9 144 70.1
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 2.5e-56 222.2 146 71.9
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 5.6e-56 221.1 146 65.8
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 6.2e-55 217.6 146 66.4
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 4.0e-54 214.9 142 65.5
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 5.3e-54 214.5 144 68.1
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 2.0e-53 212.6 146 65.1
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 1.1e-51 206.8 161 62.7
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 5.6e-48 194.5 146 58.9
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 1.5e-45 186.4 106 74.5
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 1.1e-43 180.3 144 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 3.2e-43 178.7 144 56.9
Pp3c9_11540 Physcomitrium patens HOM05D006424 ORTHO05D007945 9.3e-43 177.2 146 54.1
SalBow2G1302 Salvia bowleyana HOM05D006424 ORTHO05D007945 1.1e-40 170.2 145 57.2
Pp3c22_2660 Physcomitrium patens HOM05D006424 ORTHO05D007945 3.3e-40 168.7 140 51.4
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 5.3e-38 161.4 139 50.4
Thecc.06G024600 Theobroma cacao HOM05D006424 ORTHO05D007945 1.1e-35 153.7 69 100.0
Sed0007474 Sechium edule HOM05D006424 ORTHO05D007945 3.7e-31 138.7 69 84.1
Dinv38123 Davidia involucrata HOM05D006424 ORTHO05D007945 1.1e-30 137.1 69 84.1
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.6e-26 123.2 106 51.9
arahy.Tifrunner.gnm1.ann1.7R86JN Arachis hypogaea HOM05D006424 ORTHO05D007945 4.4e-24 115.2 113 50.4
SEGI_16074 Sequoiadendron giganteum HOM05D006424 ORTHO05D007945 3.7e-23 112.1 69 65.2
arahy.Tifrunner.gnm1.ann1.ZYH6JG Arachis hypogaea HOM05D006424 ORTHO05D007945 1.2e-13 80.5 53 66.0
arahy.Tifrunner.gnm1.ann1.YP381G Arachis hypogaea HOM05D006424 ORTHO05D007945 7.2e-11 71.2 45 68.9
Psat7g257120 Pisum sativum HOM05D006424 ORTHO05D007945 9.4e-11 70.9 37 83.8
EL10Ac9g21901 Beta vulgaris HOM05D006424 ORTHO05D007945 6.7e-09 64.7 31 83.9


User provided reference genes

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