Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G177400 Theobroma cacao HOM05D001998 ORTHO05D002026 1.5e-44 182.6 98 100.0
Thecc.07G144900 Theobroma cacao HOM05D001998 ORTHO05D002026 1.5e-15 86.3 77 59.7
Thecc.02G020500 Theobroma cacao HOM05D001998 ORTHO05D002026 4.7e-14 81.3 65 63.1
Aqoxy7G01342 Aquilegia oxysepala HOM05D001998 ORTHO05D002026 8.3e-11 70.5 70 55.7
GSVIVG01018177001 Vitis vinifera HOM05D001998 ORTHO05D002026 1.4e-10 69.7 55 63.6
Cpa.g.sc170.26 Carica papaya HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
Cpa.g.sc8.43 Carica papaya HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
Ca_02124_v3 Cicer arietinum L. HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
Ca_17920_v3 Cicer arietinum L. HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
COL.COLO4_10320 Corchorus olitorius HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
COL.COLO4_12470 Corchorus olitorius HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
Thecc.04G084000 Theobroma cacao HOM05D001998 ORTHO05D002026 1.8e-10 69.3 50 70.0
CAN.G365.6 Capsicum annuum HOM05D001998 ORTHO05D002026 2.4e-10 68.9 48 70.8
Ca_18128_v3 Cicer arietinum L. HOM05D001998 ORTHO05D002026 2.4e-10 68.9 50 68.0
Cc02_g24620 Coffea canephora HOM05D001998 ORTHO05D002026 2.4e-10 68.9 48 70.8
Gohir.D07G211800 Gossypium hirsutum HOM05D001998 ORTHO05D002026 2.4e-10 68.9 50 68.0
Gorai.001G239300 Gossypium raimondii HOM05D001998 ORTHO05D002026 2.4e-10 68.9 50 68.0
LjContig00141g0009702 Lotus japonicus HOM05D001998 ORTHO05D002026 2.4e-10 68.9 50 68.0
Oeu064577.1 Olea europaea HOM05D001998 ORTHO05D002026 2.4e-10 68.9 48 70.8
TWI14G1373 Tripterygium wilfordii HOM05D001998 ORTHO05D002026 2.4e-10 68.9 50 68.0
Atru.chr5.220 Acer truncatum HOM05D001998 ORTHO05D002026 3.1e-10 68.6 48 70.8
Gohir.A08G137366 Gossypium hirsutum HOM05D001998 ORTHO05D002026 3.1e-10 68.6 48 70.8
Gohir.D08G158300 Gossypium hirsutum HOM05D001998 ORTHO05D002026 3.1e-10 68.6 48 70.8
Gorai.004G164600 Gossypium raimondii HOM05D001998 ORTHO05D002026 3.1e-10 68.6 48 70.8
Oeu009623.1 Olea europaea HOM05D001998 ORTHO05D002026 3.1e-10 68.6 48 68.8
Ciclev10027536m.g Citrus clementina HOM05D001998 ORTHO05D002026 4.1e-10 68.2 52 65.4
Dinv43659 Davidia involucrata HOM05D001998 ORTHO05D002026 4.1e-10 68.2 47 72.3
HanXRQChr04g0123411 Helianthus annuus HOM05D001998 ORTHO05D002026 4.1e-10 68.2 50 68.0
Phvul.011G169200 Phaseolus vulgaris HOM05D001998 ORTHO05D002026 4.1e-10 68.2 77 51.9
GSVIVG01018182001 Vitis vinifera HOM05D001998 ORTHO05D002026 4.1e-10 68.2 47 72.3
CSS0002851 Camellia sinensis var. sinensis HOM05D001998 ORTHO05D002026 5.4e-10 67.8 48 66.7
CSS0037481 Camellia sinensis var. sinensis HOM05D001998 ORTHO05D002026 5.4e-10 67.8 48 66.7
Migut.B01579 Erythranthe guttata HOM05D001998 ORTHO05D002026 5.4e-10 67.8 46 71.7
Migut.N01767 Erythranthe guttata HOM05D001998 ORTHO05D002026 5.4e-10 67.8 46 71.7
Migut.N01770 Erythranthe guttata HOM05D001998 ORTHO05D002026 5.4e-10 67.8 46 71.7
Migut.N01777 Erythranthe guttata HOM05D001998 ORTHO05D002026 5.4e-10 67.8 46 71.7
Nitab4.5_0007776g0030 Nicotiana tabacum HOM05D001998 ORTHO05D002026 5.4e-10 67.8 48 68.8
Peaxi162Scf00377g00022 Petunia axillaris HOM05D001998 ORTHO05D002026 5.4e-10 67.8 48 68.8
CANSAT21G0648 Cannabis sativa HOM05D001998 ORTHO05D002026 7.0e-10 67.4 50 66.0
Cfa011139 Carpinus fangiana HOM05D001998 ORTHO05D002026 7.0e-10 67.4 77 51.9
Potri.002G143100 Populus trichocarpa HOM05D001998 ORTHO05D002026 7.0e-10 67.4 50 68.0
QL04p035900 Quercus lobata HOM05D001998 ORTHO05D002026 7.0e-10 67.4 76 52.6
SalBow5G1051 Salvia bowleyana HOM05D001998 ORTHO05D002026 7.0e-10 67.4 46 69.6
Sopen05g029330 Solanum pennellii HOM05D001998 ORTHO05D002026 7.0e-10 67.4 48 68.8
PGSC0003DMG400006994 Solanum tuberosum HOM05D001998 ORTHO05D002026 7.0e-10 67.4 48 68.8
vmacro13457 Vaccinium macrocarpon HOM05D001998 ORTHO05D002026 7.0e-10 67.4 50 68.0
CAN.G1742.1 Capsicum annuum HOM05D001998 ORTHO05D002026 9.1e-10 67.0 69 55.1
Lsat_1_v5_gn_7_10180 Lactuca sativa HOM05D001998 ORTHO05D002026 9.1e-10 67.0 50 66.0
Lj3g0022668 Lotus japonicus HOM05D001998 ORTHO05D002026 9.1e-10 67.0 47 70.2
Nitab4.5_0000882g0090 Nicotiana tabacum HOM05D001998 ORTHO05D002026 9.1e-10 67.0 48 66.7
Nitab4.5_0001329g0030 Nicotiana tabacum HOM05D001998 ORTHO05D002026 9.1e-10 67.0 47 70.2
Nitab4.5_0005050g0040 Nicotiana tabacum HOM05D001998 ORTHO05D002026 9.1e-10 67.0 47 70.2
Peaxi162Scf00350g00217 Petunia axillaris HOM05D001998 ORTHO05D002026 9.1e-10 67.0 48 66.7
Rhsim01G0113600 Rhododendron simsii HOM05D001998 ORTHO05D002026 9.1e-10 67.0 47 70.2
Thecc.01G167600 Theobroma cacao HOM05D001998 ORTHO05D002026 9.1e-10 67.0 62 61.3
vmacro08782 Vaccinium macrocarpon HOM05D001998 ORTHO05D002026 9.1e-10 67.0 47 70.2
arahy.Tifrunner.gnm1.ann1.4ZJ950 Arachis hypogaea HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 50.6
CSS0005852 Camellia sinensis var. sinensis HOM05D001998 ORTHO05D002026 1.2e-09 66.6 48 66.7
CiPaw.13G031400 Carya illinoinensis HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 51.9
Glyma.01G133400 Glycine max HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 51.9
Glyma.03G034100 Glycine max HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 51.9
HanXRQChr16g0519721 Helianthus annuus HOM05D001998 ORTHO05D002026 1.2e-09 66.6 52 63.5
Manes.01G270000 Manihot esculenta HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 50.6
Peaxi162Scf01052g00013 Petunia axillaris HOM05D001998 ORTHO05D002026 1.2e-09 66.6 47 68.1
THA.LOC104817213 Tarenaya hassleriana HOM05D001998 ORTHO05D002026 1.2e-09 66.6 50 64.0
Thecc.01G385500 Theobroma cacao HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 51.9
Thecc.04G167000 Theobroma cacao HOM05D001998 ORTHO05D002026 1.2e-09 66.6 77 51.9
arahy.Tifrunner.gnm1.ann1.G4VXQ4 Arachis hypogaea HOM05D001998 ORTHO05D002026 1.6e-09 66.2 77 50.6
Duzib133G0884 Durio zibethinus HOM05D001998 ORTHO05D002026 1.6e-09 66.2 48 66.7
ECA234G3676 Erigeron canadensis HOM05D001998 ORTHO05D002026 1.6e-09 66.2 57 61.4
Lsat_1_v5_gn_4_44381 Lactuca sativa HOM05D001998 ORTHO05D002026 1.6e-09 66.2 48 66.7
THA.LOC104802473 Tarenaya hassleriana HOM05D001998 ORTHO05D002026 1.6e-09 66.2 50 64.0
unitig_22.g5399 Utricularia gibba HOM05D001998 ORTHO05D002026 1.6e-09 66.2 46 67.4
unitig_8.g3839 Utricularia gibba HOM05D001998 ORTHO05D002026 1.6e-09 66.2 46 67.4
Actinidia12673 Actinidia chinensis HOM05D001998 ORTHO05D002026 2.0e-09 65.9 48 66.7
SalBow5G4442 Salvia bowleyana HOM05D001998 ORTHO05D002026 2.0e-09 65.9 46 67.4
Aa31LG10G14820 Aethionema arabicum HOM05D001998 ORTHO05D002026 2.7e-09 65.5 48 66.7
Duzib268G0657 Durio zibethinus HOM05D001998 ORTHO05D002026 2.7e-09 65.5 49 63.3
Gohir.A07G205700 Gossypium hirsutum HOM05D001998 ORTHO05D002026 2.7e-09 65.5 50 64.0
Prupe.2G136100 Prunus persica HOM05D001998 ORTHO05D002026 2.7e-09 65.5 90 44.4
Duzib138G1386 Durio zibethinus HOM05D001998 ORTHO05D002026 3.5e-09 65.1 48 64.6
HanXRQChr17g0568171 Helianthus annuus HOM05D001998 ORTHO05D002026 3.5e-09 65.1 48 64.6
Hma1.2p1_0341F.1_g130270 Hydrangea macrophylla HOM05D001998 ORTHO05D002026 3.5e-09 65.1 48 64.6
Sopen05g029340 Solanum pennellii HOM05D001998 ORTHO05D002026 3.5e-09 65.1 48 64.6
Thecc.04G129300 Theobroma cacao HOM05D001998 ORTHO05D002026 4.5e-09 64.7 78 51.3
Eucgr.H00035 Eucalyptus grandis HOM05D001998 ORTHO05D002026 5.9e-09 64.3 72 51.4
Hma1.2p1_0301F.1_g118200 Hydrangea macrophylla HOM05D001998 ORTHO05D002026 5.9e-09 64.3 46 65.2
Phvul.010G070500 Phaseolus vulgaris HOM05D001998 ORTHO05D002026 5.9e-09 64.3 77 49.4
Sed0005555 Sechium edule HOM05D001998 ORTHO05D002026 5.9e-09 64.3 47 66.0
Thecc.10G123300 Theobroma cacao HOM05D001998 ORTHO05D002026 5.9e-09 64.3 78 51.3
Duzib170G0315 Durio zibethinus HOM05D001998 ORTHO05D002026 7.7e-09 63.9 87 46.0
Manes.05G050100 Manihot esculenta HOM05D001998 ORTHO05D002026 7.7e-09 63.9 73 50.7
Nn8g41010 Nelumbo nucifera HOM05D001998 ORTHO05D002026 7.7e-09 63.9 47 66.0
Sc07g0002890 Simmondsia chinensis HOM05D001998 ORTHO05D002026 7.7e-09 63.9 76 47.4
Atru.chr4.641 Acer truncatum HOM05D001998 ORTHO05D002026 1.0e-08 63.5 73 49.3
Medtr8g086330 Medicago truncatula HOM05D001998 ORTHO05D002026 1.0e-08 63.5 50 70.0
Potri.014G059000 Populus trichocarpa HOM05D001998 ORTHO05D002026 1.0e-08 63.5 77 49.4
Hund23174 Selenicereus undatus HOM05D001998 ORTHO05D002026 1.0e-08 63.5 46 65.2
TPR.G24357 Trifolium pratense HOM05D001998 ORTHO05D002026 1.0e-08 63.5 50 70.0
AL5G42840 Arabidopsis lyrata HOM05D001998 ORTHO05D002026 1.3e-08 63.2 48 60.4
AT3G60540 Arabidopsis thaliana HOM05D001998 ORTHO05D002026 1.3e-08 63.2 48 60.4
CARHR170940 Cardamine hirsuta HOM05D001998 ORTHO05D002026 1.3e-08 63.2 48 60.4
Lalb_Chr01g0021491 Lupinus albus HOM05D001998 ORTHO05D002026 1.3e-08 63.2 50 70.0
MD07G1113000 Malus domestica HOM05D001998 ORTHO05D002026 1.3e-08 63.2 53 62.3
Haze_23890 Corylus avellana HOM05D001998 ORTHO05D002026 1.7e-08 62.8 99 42.4
Lalb_Chr07g0190351 Lupinus albus HOM05D001998 ORTHO05D002026 1.7e-08 62.8 45 64.4
RcHm_v2.0_Chr1g0348731 Rosa chinensis HOM05D001998 ORTHO05D002026 1.7e-08 62.8 46 65.2
Aa31LG1G26650 Aethionema arabicum HOM05D001998 ORTHO05D002026 2.2e-08 62.4 45 64.4
DCAR_023872 Daucus carota HOM05D001998 ORTHO05D002026 2.9e-08 62.0 47 66.0
Sp5g02680 Schrenkiella parvula HOM05D001998 ORTHO05D002026 3.8e-08 61.6 48 58.3
EL10Ac1g00824 Beta vulgaris HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 60.9
Ciclev10030438m.g Citrus clementina HOM05D001998 ORTHO05D002026 5.0e-08 61.2 88 46.6
FvH4_7g10790 Fragaria vesca HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN01G0933 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN03G3329 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN06G0326 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN06G1662 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN10G1170 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
FAN10G4009 Fragaria x ananassa HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 63.0
Psat7g070200 Pisum sativum HOM05D001998 ORTHO05D002026 5.0e-08 61.2 79 51.9
PGR004G0727 Punica granatum HOM05D001998 ORTHO05D002026 5.0e-08 61.2 74 47.3
TWI38G0066 Tripterygium wilfordii HOM05D001998 ORTHO05D002026 5.0e-08 61.2 46 65.2
Thhalv10006343m.g Eutrema salsugineum HOM05D001998 ORTHO05D002026 6.5e-08 60.8 46 58.7
Ah.01g003190 Amaranthus hybridus HOM05D001998 ORTHO05D002026 8.5e-08 60.5 46 60.9
Sc07g0002880 Simmondsia chinensis HOM05D001998 ORTHO05D002026 8.5e-08 60.5 75 45.3
BcaB01g03297 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BcaB02g08957 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BcaB02g08958 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BcaC01g05163 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BcaC02g07133 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BcaC02g12254 Brassica carinata HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
A04p33620 Brassica napus HOM05D002872 ORTHO05D003204 1.1e-07 60.1 44 63.6
A05p05150 Brassica napus HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
C03p29810 Brassica napus HOM05D002872 ORTHO05D003204 1.1e-07 60.1 44 63.6
C04p06000 Brassica napus HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
C04p71380 Brassica napus HOM05D002872 ORTHO05D003204 1.1e-07 60.1 44 63.6
BolC4t22230H Brassica oleracea HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BolC4t28645H Brassica oleracea HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BraA04t18826Z Brassica rapa HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
BraA05t19489Z Brassica rapa HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
Duzib150G1171 Durio zibethinus HOM05D001998 ORTHO05D002026 1.1e-07 60.1 89 43.8
Thhalv10001704m.g Eutrema salsugineum HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
Psat7g234880 Pisum sativum HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 68.2
Sp4g27130 Schrenkiella parvula HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 63.6
TPR.G4965 Trifolium pratense HOM05D001998 ORTHO05D002026 1.1e-07 60.1 44 68.2
AL4G44160 Arabidopsis lyrata HOM05D001998 ORTHO05D002026 1.5e-07 59.7 44 61.4
AT2G45070 Arabidopsis thaliana HOM05D001998 ORTHO05D002026 1.5e-07 59.7 44 61.4
CARHR140320 Cardamine hirsuta HOM05D001998 ORTHO05D002026 1.5e-07 59.7 44 61.4
Ah.08g217440 Amaranthus hybridus HOM05D001998 ORTHO05D002026 1.9e-07 59.3 75 45.3
ATR0759G050 Amborella trichopoda HOM05D001998 ORTHO05D002026 1.9e-07 59.3 96 41.7
ATR0789G104 Amborella trichopoda HOM05D001998 ORTHO05D002026 1.9e-07 59.3 46 60.9
ATR0824G116 Amborella trichopoda HOM05D001998 ORTHO05D002026 1.9e-07 59.3 46 60.9
AUR62013713 Chenopodium quinoa HOM05D001998 ORTHO05D002026 3.2e-07 58.5 81 46.9
Medtr4g028080 Medicago truncatula HOM05D001998 ORTHO05D002026 3.2e-07 58.5 43 67.4
TAR624G1274 Trochodendron aralioides HOM05D001998 ORTHO05D002026 3.2e-07 58.5 74 45.9
BolC3t15327H Brassica oleracea HOM05D002872 ORTHO05D003204 4.2e-07 58.2 42 66.7
BraA03t11701Z Brassica rapa HOM05D002872 ORTHO05D003204 4.2e-07 58.2 42 66.7
Lsat_1_v5_gn_6_46540 Lactuca sativa HOM05D001998 ORTHO05D002026 4.2e-07 58.2 81 44.4
Manes.11G142600 Manihot esculenta HOM05D001998 ORTHO05D002026 4.2e-07 58.2 99 38.4
Hund17054 Selenicereus undatus HOM05D001998 ORTHO05D002026 4.2e-07 58.2 75 44.0
Cfa011350 Carpinus fangiana HOM05D001998 ORTHO05D002026 5.5e-07 57.8 99 38.4
CDE06G2510 Ceratophyllum demersum HOM05D001998 ORTHO05D002026 5.5e-07 57.8 45 62.2
Carub.0004s2766 Capsella rubella HOM05D001998 ORTHO05D002026 7.2e-07 57.4 74 45.9
Gohir.A11G078100 Gossypium hirsutum HOM05D001998 ORTHO05D002026 7.2e-07 57.4 48 62.5
Gohir.D11G082500 Gossypium hirsutum HOM05D001998 ORTHO05D002026 7.2e-07 57.4 48 62.5
Gorai.007G088200 Gossypium raimondii HOM05D001998 ORTHO05D002026 7.2e-07 57.4 48 62.5
TAR369G0710 Trochodendron aralioides HOM05D001998 ORTHO05D002026 7.2e-07 57.4 92 44.6
Thecc.09G258100 Theobroma cacao HOM05D001998 ORTHO05D002026 9.4e-07 57.0 79 45.6
PGR119G2055 Punica granatum HOM05D001998 ORTHO05D002026 1.2e-06 56.6 97 41.2
PSO832G4490 Papaver somniferum HOM05D001998 ORTHO05D002026 2.7e-06 55.5 43 60.5
Rhsim05G0030200 Rhododendron simsii HOM05D001998 ORTHO05D002026 2.7e-06 55.5 43 60.5
SHI13555 Sapria himalayana HOM05D001998 ORTHO05D002026 2.7e-06 55.5 69 40.6
CBR_g22251 Chara braunii HOM05D001998 ORTHO05D002026 6.1e-06 54.3 47 57.4
CBR_g22253 Chara braunii HOM05D001998 ORTHO05D002026 6.1e-06 54.3 47 57.4
PSO063G2489 Papaver somniferum HOM05D001998 ORTHO05D002026 8.0e-06 53.9 43 58.1


User provided reference genes

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