Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 5.7e-273 943.7 506 100.0
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.7e-240 835.9 503 88.1
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 1.9e-239 832.4 503 87.9
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 1.1e-234 816.6 483 90.9
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 3.2e-231 805.1 503 85.7
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 2.6e-209 732.3 505 78.4
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 5.8e-209 731.1 502 77.3
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.1e-204 716.8 502 77.7
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 6.2e-203 711.1 515 75.0
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 8.1e-203 710.7 499 76.0
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 2.4e-202 709.1 503 74.6
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 9.0e-202 707.2 505 74.7
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 1.0e-197 693.7 505 74.5
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 1.0e-197 693.7 497 73.2
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 2.5e-196 689.1 505 72.3
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 3.3e-196 688.7 504 74.0
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 5.6e-196 688.0 504 73.0
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 2.8e-195 685.6 501 73.3
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 6.2e-195 684.5 509 73.1
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 1.1e-194 683.7 506 73.3
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 1.8e-194 682.9 497 73.8
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 4.0e-194 681.8 505 73.1
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 6.9e-194 681.0 519 70.9
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 9.0e-194 680.6 497 73.6
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 7.6e-193 677.6 499 74.1
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 2.9e-192 675.6 492 72.8
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 8.4e-192 674.1 499 72.9
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 1.9e-191 672.9 494 74.1
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 3.2e-191 672.2 507 71.6
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 4.2e-191 671.8 499 72.9
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 1.6e-190 669.8 502 72.9
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 2.7e-190 669.1 498 72.3
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 3.5e-190 668.7 500 71.6
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 2.3e-189 666.0 500 71.4
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 3.9e-189 665.2 492 71.7
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 4.3e-188 661.8 492 71.7
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 5.7e-188 661.4 495 71.5
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 7.4e-188 661.0 502 71.3
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 7.4e-188 661.0 506 70.9
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 9.6e-188 660.6 501 71.7
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.1e-186 657.1 504 71.2
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.8e-186 656.4 495 70.3
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 3.1e-186 655.6 495 70.7
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 3.1e-186 655.6 501 71.7
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 5.3e-186 654.8 494 71.7
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 1.5e-185 653.3 506 70.6
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 5.8e-185 651.4 495 70.1
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 7.6e-185 651.0 505 70.5
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 1.7e-184 649.8 500 70.0
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 5.0e-184 648.3 499 70.9
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 6.5e-184 647.9 506 71.1
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 2.5e-183 646.0 508 70.1
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 1.0e-181 640.6 496 68.1
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 5.1e-181 638.3 566 65.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 3.3e-180 635.6 502 71.9
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 5.3e-178 628.2 490 69.6
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 6.9e-178 627.9 505 68.9
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.5e-177 626.7 506 66.4
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 3.4e-177 625.5 521 66.2
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 5.9e-177 624.8 493 66.9
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.3e-176 623.6 444 77.9
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 1.4e-175 620.2 492 68.7
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.9e-175 619.8 492 69.1
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 2.7e-174 615.9 506 67.4
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 2.7e-174 615.9 501 66.3
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.4e-170 603.6 555 62.7
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 9.1e-170 600.9 457 72.6
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 2.0e-169 599.7 496 65.9
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 5.9e-169 598.2 459 71.7
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 1.0e-168 597.4 484 68.4
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 3.2e-167 592.4 480 70.8
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 7.0e-162 574.7 517 62.9
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.7e-160 570.1 460 69.1
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 4.2e-159 565.5 451 69.6
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 7.2e-159 564.7 498 62.2
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 1.2e-158 563.9 496 62.1
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 3.6e-158 562.4 453 69.3
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 2.8e-155 552.7 506 62.3
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 4.8e-155 552.0 410 74.6
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.0e-153 546.6 516 60.9
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 4.5e-153 545.4 497 61.8
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 3.8e-152 542.3 416 72.8
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 8.0e-150 534.6 472 64.2
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.0e-149 534.3 469 64.6
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 4.4e-148 528.9 436 68.1
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 2.4e-138 496.5 377 68.7
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 3.9e-128 462.6 365 70.7
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 2.3e-125 453.4 358 68.2
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 3.4e-108 396.4 494 51.4
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 3.0e-104 383.3 323 66.3
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 5.8e-100 369.0 507 45.8
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 1.9e-98 364.0 288 69.1
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 6.0e-97 359.0 472 47.7
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 1.5e-95 354.4 258 72.9
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.8e-80 304.3 239 68.6
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.1e-79 301.6 253 67.2
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.5e-71 273.9 218 63.8
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 8.2e-70 268.9 248 64.9
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 5.1e-64 249.6 171 74.9
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 2.2e-62 244.2 211 64.0
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 1.4e-58 231.5 153 77.1
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 2.0e-52 211.1 180 67.2
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 2.2e-51 207.6 156 67.9
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 2.0e-44 184.5 144 66.7
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 9.4e-42 175.6 137 70.8
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.7e-36 157.5 164 54.9
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 5.5e-34 149.8 489 29.7
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.1e-33 147.9 95 84.2
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 5.2e-32 143.3 107 76.6
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-30 138.3 107 75.7
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 8.3e-30 136.0 86 77.9
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 9.5e-26 122.5 79 74.7
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 2.2e-22 111.3 88 72.7
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 2.2e-22 111.3 72 77.8
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 5.4e-21 106.7 102 57.8
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 4.5e-20 103.6 63 79.4
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.8e-16 89.7 59 78.0
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 2.9e-14 84.3 57 77.2
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 2.8e-09 67.8 42 73.8
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 8.9e-08 62.8 113 43.4


User provided reference genes

Program Settings