Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.8e-173 612.8 395 100.0
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.3e-162 573.9 395 86.3
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-161 573.5 395 87.3
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-160 570.5 395 86.3
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 8.4e-155 550.8 395 83.8
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 5.5e-130 468.4 403 69.7
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 6.9e-125 451.4 399 72.9
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.7e-124 448.0 412 68.2
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.2e-122 442.6 398 70.1
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.6e-121 440.3 406 72.4
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.7e-118 429.1 401 67.3
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.7e-116 421.4 413 63.7
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.3e-115 420.6 406 67.0
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-115 420.6 405 67.2
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.2e-115 419.9 410 66.6
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 8.5e-115 417.9 404 67.6
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 9.4e-114 414.5 405 61.7
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 2.1e-113 413.3 430 70.7
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.8e-112 407.9 395 58.5
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.7e-110 403.7 404 64.1
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.4e-109 400.6 415 71.6
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 9.1e-109 397.9 398 63.8
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 6.5e-107 391.7 398 59.3
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.1e-106 391.0 402 63.9
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.2e-105 387.5 405 62.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.8e-104 383.6 393 56.0
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.8e-104 383.6 412 64.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.5e-103 380.6 416 55.5
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.0e-103 380.2 389 59.4
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 4.8e-102 375.6 415 64.3
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 6.3e-102 375.2 395 65.1
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.2e-102 374.8 409 59.4
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.2e-102 374.8 400 65.8
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.4e-101 374.0 415 62.2
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.1e-101 372.5 402 59.0
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.7e-99 367.1 400 60.5
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.5e-98 364.0 407 57.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.2e-98 362.8 414 61.4
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.2e-98 362.5 416 62.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.1e-97 360.1 397 52.1
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.2e-94 350.1 395 59.0
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.1e-93 346.3 400 51.5
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.5e-92 342.8 433 48.0
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 3.5e-92 342.8 396 58.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.3e-91 340.1 403 51.6
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.6e-91 338.6 402 50.2
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 1.1e-90 337.8 405 50.1
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.5e-90 336.7 402 59.5
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.2e-89 334.3 406 58.6
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.6e-89 334.0 395 55.9
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 4.7e-89 332.4 398 56.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.0e-88 329.7 395 53.4
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.8e-88 328.6 397 51.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 8.9e-88 328.2 395 58.2
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.5e-87 327.4 406 50.2
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 7.0e-85 318.5 406 54.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.3e-83 314.3 395 64.3
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 8.6e-83 311.6 404 59.9
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 4.9e-78 295.8 403 58.1
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 7.8e-76 288.5 404 53.0
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.5e-74 283.5 397 60.2
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.5e-74 283.5 397 60.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.1e-72 276.6 401 49.1
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 4.9e-70 269.2 399 53.4
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.4e-69 266.9 399 51.1
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.6e-60 236.1 238 57.6
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.1e-57 227.3 396 45.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.6e-57 226.5 328 54.0
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-56 224.9 324 54.6
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.3e-51 208.0 479 43.0
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 9.6e-50 201.8 292 44.5
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 1.8e-48 197.6 285 55.8
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.0e-47 194.1 326 45.4
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.4e-45 188.0 453 39.3
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.9e-42 177.6 134 61.2
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.5e-42 177.2 292 38.7
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 4.3e-42 176.4 292 38.4
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.6e-42 176.0 450 44.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 5.6e-42 176.0 123 65.0
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.3e-41 174.9 324 48.5
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.6e-41 174.5 430 38.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.1e-41 174.1 292 38.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 4.0e-40 169.9 278 39.6
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.2e-39 168.3 274 39.8
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.0e-39 167.5 456 36.2
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.6e-39 167.2 261 41.0
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.6e-39 167.2 290 37.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 4.5e-39 166.4 274 39.4
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 7.6e-39 165.6 144 55.6
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 9.9e-39 165.2 138 55.8
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 9.9e-39 165.2 278 39.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.9e-39 165.2 167 49.1
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.3e-38 164.9 253 42.3
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.3e-38 164.9 130 58.5
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.7e-38 164.5 269 39.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.7e-38 164.5 277 39.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-38 164.1 313 35.5
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.9e-38 163.7 268 38.1
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.9e-38 163.7 292 37.7
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.9e-38 162.9 128 57.0
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.4e-38 162.2 122 59.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.1e-37 161.8 252 44.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.1e-37 161.8 137 57.7
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.4e-37 161.4 265 40.4
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.4e-37 161.4 268 37.7
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.4e-37 161.4 147 52.4
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.9e-37 161.0 448 40.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-37 161.0 268 38.1
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 1.9e-37 161.0 175 62.3
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.2e-37 159.8 122 58.2
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 4.2e-37 159.8 443 39.3
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 4.2e-37 159.8 268 37.3
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 7.1e-37 159.1 272 39.3
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 7.1e-37 159.1 144 52.8
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 9.3e-37 158.7 270 40.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 9.3e-37 158.7 249 40.2
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 9.3e-37 158.7 292 37.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 9.3e-37 158.7 119 60.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 9.3e-37 158.7 119 60.5
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.2e-36 158.3 267 37.1
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.2e-36 158.3 263 40.3
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.6e-36 157.9 285 37.9
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.6e-36 157.9 234 39.3
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.6e-36 157.9 237 44.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.6e-36 157.9 275 38.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 2.1e-36 157.5 442 37.1
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.7e-36 157.1 463 34.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.7e-36 157.1 463 34.8
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.7e-36 157.1 119 60.5
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-36 157.1 128 54.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-36 157.1 128 54.7
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.7e-36 157.1 275 37.5
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.5e-36 156.8 261 39.8
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.5e-36 156.8 272 36.8
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.5e-36 156.8 269 37.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 4.6e-36 156.4 456 41.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.9e-36 155.6 271 40.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.0e-35 155.2 441 39.5
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.0e-35 155.2 259 44.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.8e-35 154.5 287 37.6
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-35 153.7 259 43.6
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-35 153.7 259 43.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.7e-35 152.5 193 44.6
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.5e-34 150.6 121 56.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 4.3e-34 149.8 288 35.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.1e-33 145.6 418 42.1
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.5e-31 141.4 237 38.0
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 5.8e-31 139.4 454 36.1
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.8e-31 139.4 248 39.1
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.3e-30 138.3 152 47.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 4.9e-30 136.3 126 54.0
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-30 136.3 264 36.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 6.4e-30 136.0 86 72.1
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.9e-29 134.4 264 36.0
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 9.3e-29 132.1 263 36.1
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.6e-28 131.3 402 35.3
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.8e-27 127.9 437 35.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.3e-27 127.5 245 36.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 9.0e-16 89.0 257 33.1
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 1.7e-09 68.2 221 30.3
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 6.3e-09 66.2 43 72.1


User provided reference genes

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