Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 5.0e-93 344.4 165 100.0
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 3.0e-61 238.8 191 65.4
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 5.0e-61 238.0 184 66.8
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 4.0e-58 228.4 184 64.7
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 5.2e-42 174.9 160 58.8
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 4.6e-38 161.8 194 51.0
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 1.3e-37 160.2 186 50.5
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 9.6e-36 154.1 189 51.3
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 6.2e-35 151.4 187 50.8
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 1.3e-32 143.7 184 48.4
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 7.1e-31 137.9 185 47.0
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 6.0e-30 134.8 173 50.3
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 1.0e-29 134.0 107 63.6
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 3.0e-29 132.5 183 44.8
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 1.5e-28 130.2 194 44.8
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 1.5e-28 130.2 158 50.0
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.9e-28 129.8 185 47.0
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 1.9e-28 129.8 162 48.8
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 5.6e-28 128.3 194 45.9
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 6.2e-27 124.8 179 45.8
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 8.1e-27 124.4 180 42.2
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 3.1e-26 122.5 167 45.5
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 2.6e-25 119.4 177 42.9
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 2.6e-25 119.4 157 43.9
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 3.4e-25 119.0 177 43.5
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 3.4e-25 119.0 166 44.6
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 7.6e-25 117.9 164 47.6
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 9.9e-25 117.5 174 46.0
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 2.2e-24 116.3 180 44.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 2.2e-24 116.3 175 45.1
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 2.9e-24 115.9 180 44.4
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 2.9e-24 115.9 154 45.5
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 6.4e-24 114.8 179 44.7
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.9e-23 113.2 156 44.2
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 9.3e-23 110.9 189 41.3
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.6e-22 110.2 140 45.0
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.5e-22 109.0 60 81.7
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 4.6e-22 108.6 113 52.2
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 4.6e-22 108.6 114 52.6
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 7.9e-22 107.8 192 39.1
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.0e-21 107.5 168 42.9
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.3e-21 107.1 162 41.4
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 5.1e-21 105.1 109 52.3
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 5.1e-21 105.1 109 52.3
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 8.7e-21 104.4 110 53.6
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 2.5e-20 102.8 170 42.4
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 3.3e-20 102.4 203 37.9
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 7.4e-20 101.3 189 36.5
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 1.6e-19 100.1 152 43.4
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 2.8e-19 99.4 113 50.4
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 2.8e-19 99.4 181 41.4
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.1e-18 97.4 170 40.6
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 1.4e-18 97.1 201 37.8
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 1.8e-18 96.7 177 41.2
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 2.4e-18 96.3 168 40.5
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 4.0e-18 95.5 173 42.2
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 1.2e-17 94.0 170 40.0
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 3.4e-17 92.4 201 36.3
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 4.5e-17 92.0 155 39.4
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.5e-17 92.0 85 60.0
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 9.9e-17 90.9 114 47.4
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.3e-16 90.5 113 47.8
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 1.7e-16 90.1 191 37.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.9e-16 89.4 155 38.7
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.9e-15 86.7 113 46.9
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 7.1e-15 84.7 162 38.3
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 9.3e-15 84.3 171 36.8
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 1.6e-14 83.6 118 43.2
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 1.6e-14 83.6 105 46.7
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 2.1e-14 83.2 192 35.4
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 4.6e-14 82.0 81 54.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.8e-13 80.1 197 31.0
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 2.5e-12 76.3 169 39.6
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 3.7e-11 72.4 130 40.8
Gorai.013G006200 Gossypium raimondii HOM05D007902 ORTHO05D009839 4.8e-11 72.0 51 76.5
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 4.0e-10 68.9 140 31.4
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.2e-09 67.4 124 38.7
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 4.5e-09 65.5 165 30.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 5.8e-09 65.1 55 61.8
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 7.6e-09 64.7 157 35.0
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.7e-08 63.5 51 60.8
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 1.7e-08 63.5 81 42.0
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 2.9e-08 62.8 81 42.0
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 2.9e-08 62.8 81 42.0
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 1.4e-07 60.5 179 29.1
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.5e-07 59.7 148 30.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.2e-07 59.3 148 29.7
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 4.2e-07 58.9 195 28.2
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 9.3e-07 57.8 131 32.1
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 9.3e-07 57.8 180 29.4
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.2e-06 57.4 155 28.4
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 1.6e-06 57.0 149 29.5
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 2.7e-06 56.2 36 63.9
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 2.7e-06 56.2 148 26.4
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 3.5e-06 55.8 181 28.2
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 3.5e-06 55.8 145 29.0
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 4.6e-06 55.5 190 27.9
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 4.6e-06 55.5 193 28.0
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 4.6e-06 55.5 206 27.7
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 6.0e-06 55.1 185 26.5
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 7.9e-06 54.7 179 26.8
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 7.9e-06 54.7 180 28.3
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 7.9e-06 54.7 144 29.2
Zm00001eb198700 Zea mays HOM05D000727 ORTHO05D000541 7.9e-06 54.7 48 47.9


User provided reference genes

Program Settings