Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G164000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-81 305.8 152 100.0
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 7.0e-17 91.3 102 42.2
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 2.3e-15 86.3 130 36.2
Gorai.001G032500 Gossypium raimondii HOM05D014430 ORTHO05D002259 1.1e-14 84.0 108 37.0
Gohir.D07G031150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.9e-14 83.2 108 37.0
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-14 83.2 159 36.5
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 9.5e-14 80.9 123 35.8
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-12 77.4 133 35.3
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-12 77.0 130 33.8
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-12 76.6 140 33.6
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-12 76.6 128 32.0
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-12 76.3 141 32.6
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 2.3e-12 76.3 117 36.8
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-12 75.9 128 29.7
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-12 75.5 144 33.3
Thecc.07G153900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-11 73.9 126 38.1
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.6e-11 72.8 125 40.8
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 9.8e-11 70.9 63 49.2
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-10 70.1 144 31.2
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-10 69.3 142 30.3
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-10 69.3 106 35.8
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 2.9e-10 69.3 131 30.5
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 3.7e-10 68.9 128 30.5
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-10 68.6 141 31.2
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-09 67.4 151 29.8
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-09 67.4 60 46.7
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-09 67.0 128 31.2
Hma1.2p1_3886F.1_g337920 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.4e-09 67.0 125 31.2
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-09 66.6 130 31.5
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-09 66.6 108 35.2
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-09 66.6 128 27.3
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 2.4e-09 66.2 139 29.5
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.4e-09 66.2 126 30.2
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 2.4e-09 66.2 98 34.7
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-09 65.9 142 30.3
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.2e-09 65.9 114 30.7
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-09 65.1 127 32.3
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 7.0e-09 64.7 128 30.5
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 7.0e-09 64.7 143 26.6
Atru.chr4.3157 Acer truncatum HOM05D000003 ORTHO05D002259 9.2e-09 64.3 127 27.6
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 9.2e-09 64.3 119 29.4
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-08 63.9 128 26.6
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-08 63.5 129 28.7
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-08 63.5 127 28.3
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-08 63.5 132 29.5
Gohir.A07G027150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.6e-08 63.5 45 51.1
Atru.chr4.1523 Acer truncatum HOM05D000003 ORTHO05D002259 4.6e-08 62.0 127 27.6
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 5.9e-08 61.6 112 32.1
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.9e-08 61.6 119 29.4
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-08 61.2 129 30.2
Thecc.10G061600 Theobroma cacao HOM05D000003 ORTHO05D002259 7.8e-08 61.2 113 31.0
Thecc.02G247200 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-07 60.5 114 28.9
Atru.chr1.787 Acer truncatum HOM05D002354 ORTHO05D002259 1.7e-07 60.1 142 28.2
Thecc.05G155300 Theobroma cacao HOM05D014430 ORTHO05D002259 1.7e-07 60.1 94 35.1
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 3.0e-07 59.3 119 29.4
Thecc.06G134300 Theobroma cacao HOM05D014430 ORTHO05D002259 3.0e-07 59.3 58 44.8
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 3.9e-07 58.9 102 33.3
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 5.0e-07 58.5 129 29.5
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 6.6e-07 58.2 112 28.6
Atru.chr6.295 Acer truncatum HOM05D000003 ORTHO05D002259 6.6e-07 58.2 142 27.5
Atru.chr5.2972 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-06 57.4 118 29.7
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-06 57.4 130 27.7
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 57.0 111 29.7
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 56.6 129 25.6
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-06 56.6 101 36.6
Thecc.02G298600 Theobroma cacao HOM05D029474 ORTHO05D002259 1.9e-06 56.6 102 27.5
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 56.2 101 29.7
Atru.chr8.877 Acer truncatum HOM05D000003 ORTHO05D002259 2.5e-06 56.2 128 28.1
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 2.5e-06 56.2 84 36.9
Thecc.07G137100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.5e-06 56.2 97 34.0
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-06 55.8 171 24.6
Atru.chr6.1197 Acer truncatum HOM05D000003 ORTHO05D002259 4.3e-06 55.5 129 25.6
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 5.6e-06 55.1 108 34.3
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 7.3e-06 54.7 124 28.2
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 7.3e-06 54.7 119 26.1
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-06 54.3 129 27.1


User provided reference genes

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