Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.7e-44 181.4 81 100.0
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 8.3e-33 143.3 70 91.4
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 2.3e-30 135.2 67 91.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.7e-14 82.4 51 82.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 3.1e-11 71.6 59 59.3
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 3.1e-11 71.6 40 85.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 1.2e-10 69.7 40 80.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.2e-10 69.7 40 80.0
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.2e-10 69.7 40 80.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-10 69.3 40 80.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.5e-10 69.3 51 64.7
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.0e-10 68.9 66 54.5
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 2.0e-10 68.9 40 77.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 2.0e-10 68.9 40 77.5
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 2.0e-10 68.9 66 54.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.6e-10 68.6 40 80.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 4.4e-10 67.8 40 77.5
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.4e-10 67.8 40 80.0
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.4e-10 67.8 40 80.0
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.4e-10 67.8 40 80.0
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 77.5
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 77.5
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 77.5
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 77.5
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 5.8e-10 67.4 43 72.1
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 77.5
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 5.8e-10 67.4 40 75.0
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 7.5e-10 67.0 64 51.6
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 7.5e-10 67.0 40 75.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 9.9e-10 66.6 40 75.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 9.9e-10 66.6 40 77.5
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 9.9e-10 66.6 40 77.5
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 9.9e-10 66.6 40 75.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.3e-09 66.2 49 65.3
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.3e-09 66.2 40 77.5
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.7e-09 65.9 40 75.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.7e-09 65.9 40 75.0
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 1.7e-09 65.9 40 75.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.7e-09 65.9 40 75.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.2e-09 65.5 40 77.5
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 2.2e-09 65.5 40 72.5
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 2.2e-09 65.5 40 75.0
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.2e-09 65.5 40 77.5
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.2e-09 65.5 40 77.5
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 2.9e-09 65.1 40 72.5
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.9e-09 65.1 40 72.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.9e-09 65.1 40 75.0
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.9e-09 65.1 40 72.5
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.7e-09 64.7 40 72.5
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 3.7e-09 64.7 66 48.5
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.7e-09 64.7 40 75.0
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 3.7e-09 64.7 40 72.5
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.7e-09 64.7 40 75.0
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 4.9e-09 64.3 40 70.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 4.9e-09 64.3 66 48.5
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 4.9e-09 64.3 40 70.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 4.9e-09 64.3 40 75.0
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 6.4e-09 63.9 66 47.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 6.4e-09 63.9 66 47.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 6.4e-09 63.9 40 72.5
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 6.4e-09 63.9 40 72.5
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.4e-09 63.9 40 75.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 67.5
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 8.3e-09 63.5 66 47.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 67.5
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 75.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 70.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 75.0
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 72.5
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 8.3e-09 63.5 40 75.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.1e-08 63.2 66 45.5
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.1e-08 63.2 40 67.5
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.1e-08 63.2 40 72.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.1e-08 63.2 40 67.5
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.1e-08 63.2 40 72.5
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 70.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 70.0
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 72.5
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 72.5
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 70.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.4e-08 62.8 47 61.7
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.4e-08 62.8 40 72.5
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 70.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 70.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 72.5
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 70.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 70.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 72.5
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 72.5
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.9e-08 62.4 40 72.5
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.4e-08 62.0 40 70.0
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.4e-08 62.0 40 70.0
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.4e-08 62.0 40 67.5
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.4e-08 62.0 40 67.5
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 3.2e-08 61.6 40 72.5
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.2e-08 61.6 40 67.5
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.4e-08 60.8 40 67.5
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 5.4e-08 60.8 40 67.5
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 5.4e-08 60.8 40 67.5
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 5.4e-08 60.8 40 67.5
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 7.1e-08 60.5 40 70.0
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 7.1e-08 60.5 40 62.5
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 7.1e-08 60.5 40 62.5
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 7.1e-08 60.5 40 62.5
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 7.1e-08 60.5 40 62.5
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 7.1e-08 60.5 40 62.5
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 9.2e-08 60.1 40 67.5
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 9.2e-08 60.1 40 62.5
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 9.2e-08 60.1 40 67.5
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.2e-07 59.7 40 67.5
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.6e-07 59.3 40 65.0
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.6e-07 59.3 40 65.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.6e-07 59.3 40 65.0
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 2.1e-07 58.9 40 65.0
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 4.6e-07 57.8 40 62.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 4.6e-07 57.8 40 65.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 1.7e-06 55.8 40 60.0


User provided reference genes

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