Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.2e-75 285.0 145 100.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.3e-49 199.1 145 76.6
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.8e-46 189.5 146 71.2
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.2e-35 152.1 147 60.5
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.2e-35 152.1 147 61.2
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.1e-35 151.0 147 61.2
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.7e-34 149.1 127 70.9
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.0e-33 147.1 144 61.1
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.8e-33 146.4 144 61.1
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-32 142.9 144 59.7
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 2.7e-18 95.9 135 47.4
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 1.8e-17 93.2 138 51.4
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.5e-16 90.1 132 47.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.5e-16 89.4 147 44.9
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.5e-16 89.4 147 46.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.7e-16 88.2 140 41.4
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 7.4e-16 87.8 146 43.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.3e-15 87.0 139 44.6
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.2e-15 84.3 148 41.2
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-14 83.6 147 39.5
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.3e-14 81.6 141 38.3
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 6.9e-14 81.3 150 41.3
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.9e-14 81.3 150 41.3
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.0e-14 80.9 156 41.7
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 2.0e-13 79.7 148 37.8
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 7.7e-13 77.8 128 43.8
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.0e-12 77.4 152 40.8
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 2.9e-12 75.9 151 37.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 6.5e-12 74.7 141 36.9
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-11 73.9 151 39.1
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-11 73.6 150 38.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.9e-11 73.2 170 36.5
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.9e-11 73.2 150 40.0
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-11 73.2 118 45.8
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-11 73.2 120 48.3
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-11 73.2 120 48.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.5e-11 72.8 148 36.5
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.2e-11 72.0 113 42.5
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 5.5e-11 71.6 137 37.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 5.5e-11 71.6 111 43.2
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 9.4e-11 70.9 145 37.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-10 70.1 129 42.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-10 70.1 132 42.4
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 2.7e-10 69.3 146 40.4
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 3.6e-10 68.9 73 58.9
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 3.6e-10 68.9 62 64.5
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.1e-10 68.2 145 35.2
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 6.1e-10 68.2 112 45.5
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.0e-09 67.4 122 44.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 2.3e-09 66.2 131 37.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.3e-09 66.2 132 43.2
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.9e-09 65.5 68 55.9
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 5.1e-09 65.1 141 34.8
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.7e-09 64.7 127 40.2
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 6.7e-09 64.7 64 57.8
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 8.8e-09 64.3 146 39.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 8.8e-09 64.3 71 50.7
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 8.8e-09 64.3 80 50.0
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.1e-08 63.9 55 63.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.5e-08 63.5 51 66.7
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.5e-08 63.5 57 59.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 2.0e-08 63.2 51 68.6
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.5e-08 62.8 58 56.9
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 3.3e-08 62.4 149 34.9
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.3e-08 62.4 133 36.1
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.3e-08 62.4 142 38.0
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 3.3e-08 62.4 55 61.8
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.3e-08 62.4 51 64.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.3e-08 62.0 103 42.7
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 4.3e-08 62.0 63 55.6
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 5.7e-08 61.6 52 63.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.7e-08 61.6 118 40.7
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 5.7e-08 61.6 152 30.3
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 7.4e-08 61.2 114 37.7
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 9.7e-08 60.8 140 36.4
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 9.7e-08 60.8 140 36.4
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 9.7e-08 60.8 55 63.6
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 9.7e-08 60.8 51 62.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 9.7e-08 60.8 129 38.8
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.7e-08 60.8 144 34.0
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 9.7e-08 60.8 55 63.6
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 59 54.2
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.3e-07 60.5 52 63.5
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.3e-07 60.5 114 37.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.3e-07 60.5 148 35.8
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 1.3e-07 60.5 50 70.0
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.7e-07 60.1 150 34.7
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.7e-07 60.1 56 64.3
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.7e-07 60.1 52 63.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 1.7e-07 60.1 152 30.3
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 1.7e-07 60.1 162 29.6
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 2.2e-07 59.7 46 65.2
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.2e-07 59.7 46 65.2
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 2.2e-07 59.7 83 48.2
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 2.2e-07 59.7 121 39.7
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.2e-07 59.7 139 37.4
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 2.8e-07 59.3 50 60.0
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-07 59.3 115 36.5
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 2.8e-07 59.3 47 66.0
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.7e-07 58.9 66 53.0
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.7e-07 58.9 68 50.0
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 3.7e-07 58.9 68 50.0
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 3.7e-07 58.9 68 50.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.7e-07 58.9 58 60.3
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 3.7e-07 58.9 97 46.4
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 3.7e-07 58.9 121 37.2
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 3.7e-07 58.9 76 48.7
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.8e-07 58.5 140 35.0
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.8e-07 58.5 54 59.3
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 4.8e-07 58.5 65 55.4
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.8e-07 58.5 52 59.6
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 6.3e-07 58.2 46 63.0
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 6.3e-07 58.2 135 35.6
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 6.3e-07 58.2 46 63.0
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 6.3e-07 58.2 46 63.0
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 6.3e-07 58.2 135 35.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 6.3e-07 58.2 67 58.2
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 8.2e-07 57.8 120 34.2
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 8.2e-07 57.8 55 61.8
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.2e-07 57.8 52 59.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.2e-07 57.8 45 64.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 8.2e-07 57.8 143 32.9
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.1e-06 57.4 57 56.1
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.1e-06 57.4 100 42.0
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.1e-06 57.4 114 39.5
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.1e-06 57.4 58 53.4
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.4e-06 57.0 139 34.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.4e-06 57.0 48 60.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.4e-06 57.0 45 68.9
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.4e-06 57.0 81 45.7
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.4e-06 57.0 43 67.4
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.4e-06 57.0 128 37.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.8e-06 56.6 59 54.2
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.8e-06 56.6 49 63.3
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.8e-06 56.6 52 59.6
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.8e-06 56.6 46 60.9
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.8e-06 56.6 112 39.3
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 43 65.1
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.4e-06 56.2 132 37.9
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 2.4e-06 56.2 143 30.8
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 2.4e-06 56.2 105 43.8
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 37 75.7
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 3.1e-06 55.8 88 44.3
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 3.1e-06 55.8 64 51.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 3.1e-06 55.8 64 51.6
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.1e-06 55.8 118 39.8
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 3.1e-06 55.8 35 77.1
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.1e-06 55.8 46 63.0
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.1e-06 55.8 50 62.0
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 4.1e-06 55.5 142 35.2
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.1e-06 55.5 101 40.6
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-06 55.5 143 36.4
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 4.1e-06 55.5 63 55.6
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 4.1e-06 55.5 56 53.6
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-06 55.1 101 40.6
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 6.9e-06 54.7 54 55.6
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 6.9e-06 54.7 114 39.5
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 6.9e-06 54.7 58 53.4
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 6.9e-06 54.7 58 53.4
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 6.9e-06 54.7 87 42.5
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 6.9e-06 54.7 47 66.0
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 6.9e-06 54.7 43 62.8
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 6.9e-06 54.7 46 63.0
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 9.1e-06 54.3 136 32.4
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 9.1e-06 54.3 46 60.9
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 9.1e-06 54.3 86 45.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 9.1e-06 54.3 145 33.1


User provided reference genes

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