Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G143500 Theobroma cacao HOM05D000705 ORTHO05D408764 2.8e-91 338.6 166 100.0
Thecc.07G086600 Theobroma cacao HOM05D000058 ORTHO05D010790 2.5e-28 129.4 144 55.6
Thecc.10G159500 Theobroma cacao HOM05D000070 ORTHO05D012267 1.4e-23 113.6 122 56.6
Ah.01g003440 Amaranthus hybridus HOM05D000705 ORTHO05D002970 3.3e-12 75.9 50 74.0
Phvul.008G284000 Phaseolus vulgaris HOM05D000705 ORTHO05D002970 5.7e-12 75.1 40 92.5
Cpa.g.sc136.75 Carica papaya HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
AUR62025100 Chenopodium quinoa HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Ca_06444_v3 Cicer arietinum L. HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
COL.COLO4_19678 Corchorus olitorius HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
DCAR_021075 Daucus carota HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Duzib133G0043 Durio zibethinus HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Migut.M01475 Erythranthe guttata HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Glyma.02G304500 Glycine max HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Glyma.14G009300 Glycine max HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
MD17G1122900 Malus domestica HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Prupe.3G192600 Prunus persica HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Rhsim06G0181600 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Rhsim06G0182500 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Sc20g0003050 Simmondsia chinensis HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
vmacro12038 Vaccinium macrocarpon HOM05D000705 ORTHO05D002970 9.7e-12 74.3 40 90.0
Actinidia20612 Actinidia chinensis HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
EL10Ac9g22352 Beta vulgaris HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
CANSAT64G0784 Cannabis sativa HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 90.0
AUR62037153 Chenopodium quinoa HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
DCAR_013816 Daucus carota HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
Dinv05341 Davidia involucrata HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
Dinv21331 Davidia involucrata HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
Rhsim02G0088100 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
Hund08096 Selenicereus undatus HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
SGA_v2.0_scaffold186G40149 Striga asiatica HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
TAR626G0639 Trochodendron aralioides HOM05D000705 ORTHO05D002970 1.3e-11 73.9 40 87.5
Gohir.A07G194100 Gossypium hirsutum HOM05D000705 ORTHO05D002970 1.7e-11 73.6 40 87.5
Lj8A139G61 Lonicera japonica HOM05D000705 ORTHO05D002970 1.7e-11 73.6 40 85.0
VMungo0647G1055 Vigna mungo HOM05D000705 ORTHO05D002970 1.7e-11 73.6 40 87.5
AL3G41820 Arabidopsis lyrata HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
AT5G48300 Arabidopsis thaliana HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
BcaB06g26766 Brassica carinata HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
BcaC06g35827 Brassica carinata HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
A07p06850 Brassica napus HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
C07p10430 Brassica napus HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
BolC7t41513H Brassica oleracea HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
BraA07t28477Z Brassica rapa HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
CARHR102050 Cardamine hirsuta HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
PSO017G6511 Papaver somniferum HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
PSO478G5127 Papaver somniferum HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
Sp3g23080 Schrenkiella parvula HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
THA.LOC104808827 Tarenaya hassleriana HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 87.5
GSVIVG01030141001 Vitis vinifera HOM05D000705 ORTHO05D002970 2.2e-11 73.2 40 85.0
Aa31sc1463G10 Aethionema arabicum HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 85.0
ATR0751G029 Amborella trichopoda HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
BcaB04g19569 Brassica carinata HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 85.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.8e-11 72.8 40 87.5
Cfa014191 Carpinus fangiana HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
CiPaw.04G198100 Carya illinoinensis HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Ca_16323_v3 Cicer arietinum L. HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Haze_12570 Corylus avellana HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Duzib138G0676 Durio zibethinus HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Gohir.A11G146800 Gossypium hirsutum HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Gohir.D07G200200 Gossypium hirsutum HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Gorai.001G224500 Gossypium raimondii HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Manes.12G067900 Manihot esculenta HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Medtr3g082150 Medicago truncatula HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Psat5g110720 Pisum sativum HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
Potri.014G171800 Populus trichocarpa HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
PGR044G2172 Punica granatum HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
SalBow8G3644 Salvia bowleyana HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
TPR.G23129 Trifolium pratense HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 87.5
unitig_21.g20244 Utricularia gibba HOM05D000705 ORTHO05D002970 2.8e-11 72.8 40 85.0
arahy.Tifrunner.gnm1.ann1.IMCH57 Arachis hypogaea HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
ClCG02G003100 Citrullus lanatus HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 87.5
Cc05_g09820 Coffea canephora HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Gohir.D11G153500 Gossypium hirsutum HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Gorai.007G163700 Gossypium raimondii HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Lsat_1_v5_gn_7_98980 Lactuca sativa HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Lalb_Chr04g0247361 Lupinus albus HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Lalb_Chr04g0247561 Lupinus albus HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Manes.13G058900 Manihot esculenta HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 87.5
Medtr5g097010 Medicago truncatula HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
Psat2g005160 Pisum sativum HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
unitig_21.g20242 Utricularia gibba HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 85.0
vmacro22935 Vaccinium macrocarpon HOM05D000705 ORTHO05D002970 3.7e-11 72.4 40 82.5
AL8G21020 Arabidopsis lyrata HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 85.0
arahy.Tifrunner.gnm1.ann1.CKCA5J Arachis hypogaea HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 85.0
MELO3C024175.2 Cucumis melo HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 85.0
CsaV3_7G002310 Cucumis sativus L. HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 85.0
MBI15_g41440_MAGBIO Magnolia biondii HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 82.5
Nn1g07671 Nelumbo nucifera HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 87.5
Peaxi162Scf00111g00412 Petunia axillaris HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 87.5
RcHm_v2.0_Chr2g0155241 Rosa chinensis HOM05D000705 ORTHO05D002970 4.8e-11 72.0 40 87.5
Atru.chr6.3447 Acer truncatum HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Actinidia12341 Actinidia chinensis HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 87.5
MSTRG.7110 Avicennia marina HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Carub.0008s0785 Capsella rubella HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
CDE06G2395 Ceratophyllum demersum HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
ECA238G4232 Erigeron canadensis HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Eucgr.K01372 Eucalyptus grandis HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
LjContig00081g0017715 Lotus japonicus HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Nn1g08320 Nelumbo nucifera HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Nitab4.5_0001022g0030 Nicotiana tabacum HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Nitab4.5_0007468g0020 Nicotiana tabacum HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
vmacro15717 Vaccinium macrocarpon HOM05D000705 ORTHO05D002970 6.3e-11 71.6 39 84.6
Zm00001eb042990 Zea mays HOM05D000705 ORTHO05D002970 6.3e-11 71.6 40 85.0
Ciclev10014741m.g Citrus clementina HOM05D000705 ORTHO05D002970 8.2e-11 71.2 40 82.5
Dinv05345 Davidia involucrata HOM05D000872 ORTHO05D000777 8.2e-11 71.2 39 84.6
Gohir.A07G162500 Gossypium hirsutum HOM05D000705 ORTHO05D002970 8.2e-11 71.2 40 80.0
Gohir.D07G169100 Gossypium hirsutum HOM05D000705 ORTHO05D002970 8.2e-11 71.2 40 80.0
Gorai.N000500 Gossypium raimondii HOM05D000705 ORTHO05D002970 8.2e-11 71.2 40 80.0
Os08g0345800 Oryza sativa ssp. japonica HOM05D000705 ORTHO05D002970 8.2e-11 71.2 40 85.0
QL04p065851 Quercus lobata HOM05D000705 ORTHO05D002970 8.2e-11 71.2 39 87.2
Aqoxy4G02328 Aquilegia oxysepala HOM05D000705 ORTHO05D002970 1.1e-10 70.9 40 82.5
Sed0020665 Sechium edule HOM05D000705 ORTHO05D002970 1.1e-10 70.9 40 85.0
Thecc.01G201500 Theobroma cacao HOM05D000705 ORTHO05D002970 1.1e-10 70.9 40 87.5
BcaC06g30811 Brassica carinata HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
A06p39260 Brassica napus HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
C07p39080 Brassica napus HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
BolC7t44426H Brassica oleracea HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
BraA06t26840Z Brassica rapa HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
Thhalv10003993m.g Eutrema salsugineum HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
FAN02G2020 Fragaria x ananassa HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
FAN05G0312 Fragaria x ananassa HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
FAN09G3843 Fragaria x ananassa HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
HanXRQChr11g0329781 Helianthus annuus HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 80.0
MBI14_g37688_MAGBIO Magnolia biondii HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
Oeu017921.2 Olea europaea HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
Os09g0298200 Oryza sativa ssp. japonica HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
QL04p065986 Quercus lobata HOM05D000705 ORTHO05D002970 1.4e-10 70.5 39 84.6
Sabra14G0131000 Salix brachista HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
SalBow8G4724 Salvia bowleyana HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
Sp2g18660 Schrenkiella parvula HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
Solyc07g056140.3 Solanum lycopersicum HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
Sopen07g029500 Solanum pennellii HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
TWI36G1361 Tripterygium wilfordii HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
TWI75G1377 Tripterygium wilfordii HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 85.0
unitig_744.g24510 Utricularia gibba HOM05D000705 ORTHO05D002970 1.4e-10 70.5 40 82.5
HanXRQChr16g0515251 Helianthus annuus HOM05D000705 ORTHO05D002970 1.8e-10 70.1 40 82.5
PGSC0003DMG400031084 Solanum tuberosum HOM05D000705 ORTHO05D002970 1.8e-10 70.1 40 82.5
CAN.G585.15 Capsicum annuum HOM05D000705 ORTHO05D002970 2.4e-10 69.7 40 82.5
CARHR183990 Cardamine hirsuta HOM05D000705 ORTHO05D002970 2.4e-10 69.7 40 82.5
MD09G1133900 Malus domestica HOM05D000705 ORTHO05D002970 2.4e-10 69.7 40 85.0
HPP92_000127 Vanilla planifolia HOM05D000705 ORTHO05D002970 2.4e-10 69.7 40 85.0
CSS0027173 Camellia sinensis var. sinensis HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 80.0
CSS0035735 Camellia sinensis var. sinensis HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 80.0
CAN.G164.10 Capsicum annuum HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 80.0
CDE03G0193 Ceratophyllum demersum HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 82.5
Lj1A802T39 Lonicera japonica HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 85.0
Zm00001eb176800 Zea mays HOM05D000705 ORTHO05D002970 3.1e-10 69.3 40 82.5
Sed0003930 Sechium edule HOM05D000705 ORTHO05D002970 4.1e-10 68.9 40 82.5
SEGI_19546 Sequoiadendron giganteum HOM05D000705 ORTHO05D002970 4.1e-10 68.9 40 80.0
SGA_v2.0_scaffold70G23603 Striga asiatica HOM05D000705 ORTHO05D002970 4.1e-10 68.9 40 85.0
Migut.M00521 Erythranthe guttata HOM05D000705 ORTHO05D002970 5.3e-10 68.6 40 82.5
FvH4_6g40220 Fragaria vesca HOM05D000705 ORTHO05D002970 5.3e-10 68.6 40 82.5
FAN14G1524 Fragaria x ananassa HOM05D000705 ORTHO05D002970 5.3e-10 68.6 40 82.5
Oeu016933.1 Olea europaea HOM05D000705 ORTHO05D002970 5.3e-10 68.6 40 82.5
Zm00001eb097730 Zea mays HOM05D000705 ORTHO05D002970 5.3e-10 68.6 40 80.0
MSTRG.6733 Avicennia marina HOM05D000705 ORTHO05D002970 9.1e-10 67.8 40 85.0
Lsat_1_v5_gn_4_65361 Lactuca sativa HOM05D000705 ORTHO05D002970 1.2e-09 67.4 40 80.0
Sopen12g006480 Solanum pennellii HOM05D000705 ORTHO05D002970 1.2e-09 67.4 40 75.0
PGSC0003DMG400046891 Solanum tuberosum HOM05D000705 ORTHO05D002970 2.0e-09 66.6 40 75.0
Pp3c11_8270 Physcomitrium patens HOM05D000705 ORTHO05D002970 2.6e-09 66.2 40 75.0
Solyc12g011120.3 Solanum lycopersicum HOM05D000705 ORTHO05D002970 2.6e-09 66.2 40 72.5
Pp3c2_35010 Physcomitrium patens HOM05D000705 ORTHO05D002970 4.5e-09 65.5 40 72.5
Pp3c7_20320 Physcomitrium patens HOM05D000705 ORTHO05D002970 5.9e-09 65.1 40 77.5
SMO197G0061 Selaginella moellendorffii HOM05D000705 ORTHO05D002970 5.9e-09 65.1 40 75.0
Mapoly0033s0108 Marchantia polymorpha HOM05D000705 ORTHO05D002970 7.7e-09 64.7 40 75.0
SEGI_10673 Sequoiadendron giganteum HOM05D000705 ORTHO05D014903 1.0e-08 64.3 40 75.0
AagrBONN_evm.TU.Sc2ySwM_340.122 Anthoceros agrestis HOM05D000705 ORTHO05D002970 1.7e-08 63.5 40 67.5
TPR.G1271 Trifolium pratense HOM05D000705 ORTHO05D002970 2.9e-08 62.8 34 82.4
Pp3c7_20690 Physcomitrium patens HOM05D000705 ORTHO05D002970 5.5e-07 58.5 40 62.5
SMO239G0003 Selaginella moellendorffii HOM05D000705 ORTHO05D002970 9.4e-07 57.8 39 69.2
SGA_v2.0_scaffold73G24448 Striga asiatica HOM05D000705 ORTHO05D014903 2.7e-06 56.2 35 74.3


User provided reference genes

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