Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 9.1e-165 583.6 309 100.0
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.8e-152 542.7 309 92.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.4e-149 531.2 309 90.9
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 2.3e-147 525.8 309 89.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.1e-145 519.2 309 88.3
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.8e-136 489.6 312 83.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 5.8e-135 484.6 310 82.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 4.9e-134 481.5 310 83.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 6.4e-134 481.1 310 81.6
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 8.3e-134 480.7 310 81.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.5e-132 475.3 309 81.2
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 80.3
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.3e-131 472.6 310 81.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.0e-131 472.2 310 81.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.9e-131 471.9 310 80.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.9e-131 471.9 310 81.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.1e-130 470.3 310 80.6
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.5e-130 469.2 310 80.6
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 7.3e-130 467.6 310 80.0
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.6e-129 465.3 277 88.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.4e-128 463.4 317 78.5
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.4e-128 463.4 317 78.5
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.4e-128 463.4 310 79.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 78.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 4.0e-128 461.8 310 79.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 5.2e-128 461.5 310 79.0
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 6.8e-128 461.1 310 78.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.9e-128 460.7 318 77.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 8.9e-128 460.7 310 80.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.2e-127 460.3 310 79.0
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.0e-127 459.5 310 78.7
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.4e-127 458.4 310 79.4
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 5.8e-127 458.0 310 79.4
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 9.9e-127 457.2 310 79.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.8e-126 455.3 309 76.7
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 3.8e-126 455.3 310 78.1
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 4.9e-126 454.9 310 78.7
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 6.4e-126 454.5 311 77.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 6.4e-126 454.5 310 77.4
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 8.4e-126 454.1 310 78.1
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 8.4e-126 454.1 310 78.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.1e-125 453.8 310 77.7
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.1e-125 453.8 319 75.9
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 7.1e-125 451.1 310 78.1
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.2e-124 450.3 310 77.1
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 4.6e-124 448.4 318 75.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.0e-124 448.0 310 77.1
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.8e-124 447.6 309 77.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.0e-123 447.2 310 77.4
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.7e-123 446.4 310 77.1
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.7e-123 446.4 318 76.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.6e-123 444.5 318 75.5
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.5e-122 443.4 310 76.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.5e-122 442.6 310 76.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 76.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.3e-122 441.8 318 74.5
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 5.6e-122 441.4 310 75.2
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.6e-122 441.4 318 74.8
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.3e-122 441.0 318 76.7
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 9.6e-122 440.7 310 74.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.1e-121 439.5 310 75.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.1e-121 439.5 318 74.2
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 2.8e-121 439.1 317 73.5
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.6e-121 438.7 311 77.2
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.8e-121 438.3 318 73.9
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.2e-121 438.0 318 74.2
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 8.1e-121 437.6 310 75.5
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.4e-120 436.8 311 75.6
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-120 436.8 318 73.9
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 74.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.0e-120 435.3 311 75.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 5.3e-120 434.9 362 67.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.5e-119 433.3 318 72.6
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-119 433.3 345 69.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.6e-119 432.6 316 73.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.4e-119 431.8 317 72.9
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 4.4e-119 431.8 318 72.3
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.4e-119 431.8 310 76.5
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 7.6e-119 431.0 316 73.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 9.9e-119 430.6 318 71.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 72.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 72.9
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.2e-117 425.6 318 72.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.2e-116 423.7 319 71.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 7.9e-116 421.0 311 72.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.7e-115 419.9 312 73.7
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.5e-114 416.0 313 72.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 2.1e-113 412.9 313 72.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.6e-113 412.1 294 76.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 6.2e-113 411.4 307 71.0
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.8e-112 409.8 294 75.9
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.4e-112 409.5 294 75.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 3.1e-112 409.1 297 74.7
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 9.0e-112 407.5 285 77.2
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 9.0e-112 407.5 311 70.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.6e-111 406.0 311 69.1
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.4e-110 401.4 319 72.1
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 8.4e-110 401.0 316 68.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 8.4e-110 401.0 316 68.4
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 8.4e-110 401.0 279 76.0
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 5.4e-109 398.3 317 68.5
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.9e-107 392.1 286 74.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 8.7e-107 391.0 286 74.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.8e-105 386.0 281 73.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.7e-105 385.6 321 66.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.8e-104 383.3 312 67.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.6e-103 379.4 262 77.1
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-103 379.4 256 79.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.0e-102 377.5 310 65.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.2e-102 376.3 309 68.9
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.2e-101 372.1 276 71.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.3e-98 362.5 262 73.3
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.8e-97 359.4 310 63.9
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.0e-95 353.2 262 70.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 8.4e-94 347.8 315 61.9
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-93 346.7 256 73.4
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.5e-92 342.4 309 64.1
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.9e-91 339.0 314 59.9
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.4e-87 325.9 221 76.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.0e-86 322.0 310 59.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.5e-86 321.6 228 75.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 6.7e-83 311.6 242 70.2
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.5e-82 309.7 310 56.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.4e-75 287.3 740 33.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.3e-74 282.7 391 49.6
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.7e-70 270.4 315 49.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.0e-68 261.5 315 46.7
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.7e-65 253.8 310 49.0
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 8.5e-62 241.5 178 77.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 7.0e-56 221.9 185 68.6
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.2e-55 221.1 293 46.4
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.6e-52 209.5 150 80.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 3.1e-48 196.4 251 52.2
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.0e-46 191.4 157 70.7
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.0e-43 181.4 120 83.3
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 3.0e-43 179.9 121 83.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 3.0e-43 179.9 143 69.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.1e-40 169.5 244 45.5
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 4.0e-35 152.9 254 44.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-34 151.0 121 61.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 9.8e-34 148.3 312 33.3
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.6e-28 131.0 91 74.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.8e-27 127.5 125 61.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.2e-27 125.9 153 54.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 2.9e-25 120.2 93 68.8
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.4e-25 119.0 108 64.8
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 8.3e-25 118.6 90 70.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-23 114.4 110 56.4
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.1e-20 104.0 89 58.4
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.1e-16 89.7 62 77.4
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 5.1e-14 82.8 395 24.1
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.6e-14 82.4 67 59.7
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-13 81.6 84 54.8
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.2e-08 63.5 119 36.1
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.7e-06 57.8 32 75.0


User provided reference genes

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