Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 0.0e+00 2161.0 1063 100.0
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 0.0e+00 1325.1 1065 66.0
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 0.0e+00 1323.5 1065 65.9
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 0.0e+00 1306.6 1062 65.3
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 0.0e+00 1239.6 1121 62.1
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 7.3e-312 1073.5 1129 53.1
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 5.3e-297 1024.6 1095 51.8
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 9.1e-297 1023.8 1181 49.3
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 1.3e-295 1020.0 1102 51.3
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 2.2e-295 1019.2 1152 50.2
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.6e-293 1013.1 1091 50.9
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 1.8e-292 1009.6 1170 49.3
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 9.8e-291 1003.8 1098 50.4
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.4e-289 999.2 1098 50.2
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 1.6e-288 996.5 1098 50.2
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 1.1e-286 990.3 1129 49.5
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 7.2e-286 987.6 1109 49.6
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 2.7e-285 985.7 1114 50.4
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 3.0e-284 982.2 1114 50.2
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 1.0e-279 967.2 1113 49.4
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 9.5e-278 960.7 1089 48.9
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 7.0e-273 944.5 1154 47.6
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 4.3e-270 935.3 1096 48.8
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 1.7e-266 923.3 1173 46.0
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 2.2e-266 922.9 1095 48.2
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 1.4e-265 920.2 1101 46.1
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 7.8e-264 914.4 1144 46.0
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 6.2e-261 904.8 1110 47.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 1.2e-256 890.6 1108 47.1
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.0e-256 888.3 1103 46.7
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 8.6e-255 884.4 1122 45.6
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.9e-254 883.2 1074 48.4
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 7.6e-251 871.3 1113 46.2
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 8.4e-250 867.8 1114 45.9
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 5.6e-246 855.1 1121 45.5
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 4.4e-243 845.5 1103 45.1
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.8e-234 815.8 1100 44.5
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 4.9e-234 815.5 1105 44.3
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 6.4e-234 815.1 838 52.9
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 9.3e-233 811.2 1111 42.9
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 1.3e-229 800.8 1088 44.1
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.8e-228 797.0 1089 43.7
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 1.2e-227 794.3 880 50.7
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.6e-224 783.9 1090 42.9
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 6.0e-224 781.9 1130 43.0
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 7.9e-224 781.6 1135 40.6
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 1.8e-223 780.4 822 52.7
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 6.9e-220 768.5 1116 41.9
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 4.6e-216 755.7 1103 40.4
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 9.6e-214 748.0 1092 42.0
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 2.2e-210 736.9 1110 41.2
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 2.2e-205 720.3 1104 41.1
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 2.8e-205 719.9 1285 37.2
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.7e-197 694.1 1124 38.6
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 1.4e-196 691.0 1060 40.8
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 6.9e-196 688.7 1135 38.8
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 7.9e-192 675.2 924 44.4
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 5.7e-190 669.1 826 45.8
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.1e-188 664.8 1061 39.5
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 6.5e-186 655.6 866 43.1
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 5.5e-185 652.5 1064 39.5
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.6e-184 651.0 1067 39.1
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.7e-184 650.2 1066 39.3
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.0e-183 648.3 1063 39.1
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 1.8e-183 647.5 1063 39.1
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.2e-182 644.8 1064 39.8
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.4e-180 637.1 1072 38.1
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 5.3e-180 636.0 1065 38.6
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.4e-175 621.3 987 40.2
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 5.2e-175 619.4 685 48.6
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 6.3e-173 612.5 670 49.3
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 5.9e-171 605.9 1066 38.6
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 9.5e-169 598.6 678 48.4
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 7.0e-164 582.4 1102 35.9
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 5.9e-155 552.7 937 38.7
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.5e-153 548.1 718 45.4
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 2.0e-150 537.7 884 39.8
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 2.9e-141 507.3 862 39.2
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 4.6e-139 500.0 1365 28.5
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 5.1e-138 496.5 1073 33.6
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 5.1e-122 443.4 475 50.7
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 4.2e-116 423.7 389 56.3
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 1.6e-115 421.8 834 35.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.7e-109 401.7 461 49.5
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 4.8e-104 383.6 1133 27.4
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.4e-103 382.1 417 50.1
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 2.5e-97 361.3 953 29.2
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 1.8e-95 355.1 654 34.7
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 1.8e-90 338.6 422 47.2
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 2.9e-77 294.7 433 39.3
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 1.5e-68 265.8 253 58.9
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 4.2e-68 264.2 443 41.1
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 5.5e-68 263.8 207 61.8
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.7e-67 261.5 216 59.7
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 7.5e-65 253.4 204 61.8
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.2e-64 250.0 491 32.0
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 4.4e-57 227.6 206 54.9
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.8e-56 224.9 333 44.1
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 1.1e-52 213.0 231 48.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 1.4e-47 196.1 154 59.7
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.8e-47 195.7 576 25.9
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 4.1e-47 194.5 182 54.4
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 1.2e-46 193.0 785 24.5
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.7e-46 191.8 184 54.3
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 8.0e-43 180.3 310 33.9
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 4.0e-42 177.9 266 41.0
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 4.0e-42 177.9 266 41.0
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 7.8e-38 163.7 193 48.2
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 3.9e-37 161.4 262 38.5
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 6.2e-35 154.1 287 36.9
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.1e-34 153.3 145 52.4
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 7.5e-33 147.1 354 31.6
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.5e-28 132.9 114 58.8
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 5.6e-28 131.0 195 36.9
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.8e-26 125.9 107 57.0
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.7e-24 118.2 146 46.6
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 4.1e-23 114.8 202 33.7
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.6e-19 102.8 383 29.5
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.8e-18 99.4 161 34.8
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 2.2e-16 92.4 132 42.4
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 2.4e-15 89.0 111 43.2
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 3.5e-14 85.1 184 32.6
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 4.6e-14 84.7 122 40.2
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.1e-12 80.1 96 44.8
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 5.2e-10 71.2 95 42.1
CBR_g45716 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-10 70.5 106 38.7
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.7e-08 66.2 145 29.7
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 6.4e-08 64.3 80 42.5
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 2.1e-06 59.3 80 45.0


User provided reference genes

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