Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.5e-62 242.7 118 100.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 3.3e-62 241.5 118 99.2
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 8.0e-61 236.9 118 95.8
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 9.8e-59 229.9 118 93.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.8e-57 225.7 112 95.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.4e-57 225.3 112 94.6
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.7e-56 221.9 112 93.8
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 3.3e-54 214.9 112 89.3
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 6.2e-53 210.7 113 85.0
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.1e-52 208.4 112 84.8
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 3.1e-52 208.4 111 85.6
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 5.2e-52 207.6 111 85.6
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 5.2e-52 207.6 112 83.9
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 8.9e-52 206.8 112 83.9
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.0e-51 205.7 113 86.7
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.0e-51 205.7 111 83.8
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.0e-51 205.7 111 85.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.6e-51 205.3 111 86.5
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.6e-51 205.3 112 83.0
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 3.4e-51 204.9 110 87.3
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 3.4e-51 204.9 111 84.7
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 4.4e-51 204.5 111 83.8
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.2e-50 202.2 112 82.1
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.9e-50 201.8 111 83.8
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 6.4e-50 200.7 113 81.4
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 6.4e-50 200.7 111 82.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 8.3e-50 200.3 111 82.9
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.4e-49 199.5 111 82.9
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.4e-49 198.7 114 81.6
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 7.0e-49 197.2 111 82.0
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.2e-49 196.8 111 81.1
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.6e-48 196.1 111 82.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.6e-48 196.1 111 81.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.0e-48 195.7 111 81.1
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.0e-48 195.7 111 81.1
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.7e-48 195.3 113 80.5
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.5e-48 194.9 111 81.1
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.5e-48 194.9 111 80.2
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 3.5e-48 194.9 117 76.1
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 4.6e-48 194.5 110 80.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 7.8e-48 193.7 111 79.3
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.8e-48 193.7 111 81.1
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.8e-48 193.7 111 80.2
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 7.8e-48 193.7 113 78.8
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.0e-47 193.4 111 79.3
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.3e-47 192.2 114 77.2
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.3e-47 192.2 114 77.2
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.0e-47 191.8 111 77.5
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 8.6e-47 190.3 111 78.4
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 8.6e-47 190.3 113 77.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.1e-46 189.9 111 77.5
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.5e-46 189.5 111 76.6
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.9e-46 189.1 114 74.6
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 77.5
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 77.5
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 77.5
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 77.5
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.3e-46 188.3 111 77.5
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.3e-46 188.3 111 77.5
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 3.3e-46 188.3 112 75.9
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 5.6e-46 187.6 111 77.5
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 5.6e-46 187.6 111 77.5
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 5.6e-46 187.6 111 76.6
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 7.3e-46 187.2 113 74.3
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 7.3e-46 187.2 115 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 9.5e-46 186.8 115 73.0
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 9.5e-46 186.8 111 76.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 9.5e-46 186.8 111 77.5
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 9.5e-46 186.8 111 77.5
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 9.5e-46 186.8 111 78.4
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.2e-45 186.4 109 80.7
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 75.7
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.6e-45 186.0 111 76.6
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 76.6
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 76.6
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 78.4
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 74.8
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.1e-44 183.3 111 73.9
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.1e-44 183.3 111 73.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 73.9
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.0e-44 181.4 111 74.8
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 4.0e-44 181.4 111 73.0
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 5.2e-44 181.0 113 75.2
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 5.2e-44 181.0 108 77.8
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 8.9e-44 180.3 111 73.9
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 8.9e-44 180.3 112 74.1
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.2e-43 179.9 108 77.8
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.6e-43 178.7 130 65.4
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 7.5e-43 177.2 111 73.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.3e-42 176.4 132 65.2
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.0
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.0
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 72.1
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 71.2
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 3.2e-41 171.8 111 71.2
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.2e-41 171.8 135 62.2
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 7.1e-41 170.6 110 70.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 9.2e-41 170.2 82 95.1
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 3.5e-40 168.3 111 70.3
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 4.6e-40 167.9 98 76.5
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 5.1e-39 164.5 105 70.5
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.1e-37 159.1 97 72.2
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 3.6e-37 158.3 105 67.6
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 4.7e-37 157.9 105 68.6
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 5.2e-36 154.5 105 66.7
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 6.8e-36 154.1 106 65.1
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.9e-33 146.0 129 56.6
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.2e-33 145.2 81 77.8
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.1e-33 144.8 107 65.4
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 7.1e-33 144.1 97 68.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 9.2e-33 143.7 70 100.0
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.7e-32 142.1 176 47.2
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.3e-31 139.0 81 74.1
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.0e-31 138.7 84 77.4
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 8.6e-31 137.1 87 74.7
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 4.3e-30 134.8 109 58.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 9.6e-30 133.7 106 57.5
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 6.2e-29 131.0 96 64.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.6e-27 125.6 110 50.0
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 3.4e-27 125.2 75 76.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 3.4e-27 125.2 75 76.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.9e-26 122.1 70 81.4
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.1e-25 120.2 67 79.1
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.5e-24 115.2 71 70.4
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.0e-23 113.6 74 66.2
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 5.6e-22 107.8 110 49.1
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.0e-20 101.7 54 79.6
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 3.4e-19 98.6 61 73.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 4.5e-19 98.2 78 59.0
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 7.6e-19 97.4 54 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 9.9e-19 97.1 138 35.5
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 9.3e-17 90.5 52 80.8
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.5e-14 83.2 50 80.0
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.9e-14 82.8 52 71.2
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 6.4e-10 67.8 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 7.9e-08 60.8 38 63.2
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.3e-07 59.3 58 44.8
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 4.3e-06 55.1 37 64.9


User provided reference genes

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