Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 2.7e-115 418.7 218 100.0
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 4.7e-91 338.2 213 82.6
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 3.7e-88 328.6 216 81.5
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 8.6e-85 317.4 216 78.7
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 3.4e-65 252.3 221 64.3
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 2.2e-64 249.6 140 88.6
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 1.2e-62 243.8 235 60.9
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 1.0e-61 240.7 225 60.9
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 7.4e-60 234.6 206 65.5
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.1e-59 233.0 149 79.2
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 8.1e-59 231.1 149 78.5
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 1.8e-58 229.9 193 64.2
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 4.0e-58 228.8 218 60.1
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 6.9e-58 228.0 149 77.2
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 1.5e-57 226.9 167 71.9
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.3e-56 223.8 124 90.3
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 1.3e-56 223.8 220 59.1
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 1.3e-56 223.8 224 59.4
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 1.7e-56 223.4 213 61.0
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 2.4e-55 219.5 167 68.9
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 3.2e-55 219.2 197 62.9
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 7.1e-55 218.0 220 56.4
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 3.5e-54 215.7 167 68.9
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 3.5e-54 215.7 157 70.1
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 1.0e-53 214.2 167 68.3
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 1.3e-53 213.8 167 68.3
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 2.3e-53 213.0 200 60.0
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 5.1e-53 211.8 221 55.2
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 8.7e-53 211.1 209 58.4
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 8.7e-53 211.1 208 59.6
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 8.7e-53 211.1 142 73.9
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.1e-52 210.7 214 56.5
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 1.5e-52 210.3 209 59.3
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 1.5e-52 210.3 188 61.2
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 1.9e-52 209.9 231 55.4
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 1.9e-52 209.9 166 63.9
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 4.3e-52 208.8 133 75.2
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 4.3e-52 208.8 158 67.7
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 4.3e-52 208.8 254 49.2
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 7.4e-52 208.0 209 58.9
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 7.4e-52 208.0 127 79.5
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 9.6e-52 207.6 136 72.1
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 4.8e-51 205.3 218 54.1
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 8.1e-51 204.5 145 68.3
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 1.1e-50 204.1 144 70.8
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 1.4e-50 203.8 148 68.2
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 1.4e-50 203.8 170 64.1
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 1.4e-50 203.8 155 68.4
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 1.8e-50 203.4 129 76.0
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 2.4e-50 203.0 144 70.1
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 2.4e-50 203.0 144 70.1
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 5.3e-50 201.8 221 53.8
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 6.9e-50 201.4 153 66.0
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 1.2e-49 200.7 210 53.8
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 1.2e-49 200.7 169 64.5
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 3.4e-49 199.1 137 71.5
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 1.0e-48 197.6 172 59.3
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 1.0e-48 197.6 214 53.7
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 4.9e-48 195.3 217 53.0
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 6.5e-48 194.9 129 72.9
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.4e-47 193.7 166 61.4
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 1.9e-47 193.4 155 64.5
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 4.2e-47 192.2 124 76.6
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 5.5e-47 191.8 223 50.7
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 6.0e-46 188.3 186 58.6
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 3.0e-45 186.0 119 73.1
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 3.3e-44 182.6 117 75.2
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 4.3e-44 182.2 182 55.5
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 4.3e-44 182.2 224 49.6
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 5.7e-44 181.8 118 75.4
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 7.4e-44 181.4 143 64.3
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 4.8e-43 178.7 115 75.7
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 1.7e-40 170.2 141 63.1
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 2.9e-40 169.5 150 56.0
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 6.5e-40 168.3 129 65.9
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.1e-39 167.5 143 62.2
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 1.4e-39 167.2 131 62.6
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 3.0e-37 159.5 166 58.4
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 3.9e-37 159.1 92 83.7
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 2.8e-35 152.9 104 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 4.8e-35 152.1 157 49.0
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 6.3e-35 151.8 129 58.9
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 8.2e-35 151.4 168 51.8
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 3.1e-34 149.4 121 58.7
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 3.1e-34 149.4 99 75.8
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.7e-32 143.7 178 51.1
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 6.5e-32 141.7 83 83.1
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 1.1e-31 141.0 108 65.7
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.4e-31 140.6 149 55.7
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 2.1e-30 136.7 121 55.4
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 2.7e-30 136.3 124 58.1
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.7e-30 136.3 94 73.4
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 2.6e-28 129.8 101 67.3
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 2.8e-27 126.3 71 81.7
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 3.1e-26 122.9 83 72.3
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 7.7e-25 118.2 95 62.1
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 2.5e-23 113.2 80 68.8
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 2.1e-22 110.2 92 63.0
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 4.7e-22 109.0 208 40.9
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 2.4e-18 96.7 128 46.9
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 1.2e-17 94.4 51 88.2
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 7.2e-15 85.1 70 60.0
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 9.4e-15 84.7 64 65.6
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 4.0e-13 79.3 124 40.3
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 4.4e-12 75.9 40 85.0
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 6.3e-11 72.0 162 35.8
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 5.0e-08 62.4 96 45.8
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 2.5e-07 60.1 108 29.6
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 5.5e-07 58.9 118 29.7
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 2.1e-06 57.0 139 30.2
Migut.F00112 Erythranthe guttata HOM05D009116 ORTHO05D011299 3.6e-06 56.2 114 28.9


User provided reference genes

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