Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 8.9e-106 387.1 219 100.0
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 1.3e-93 346.7 218 84.4
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 5.6e-92 341.3 219 82.2
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 9.6e-92 340.5 219 82.2
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.8e-91 339.0 219 81.7
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 6.0e-86 321.2 219 78.5
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 1.1e-84 317.0 219 77.2
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 3.3e-84 315.5 219 77.6
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.6e-83 313.2 218 75.2
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 1.8e-82 309.7 219 75.8
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 5.3e-82 308.1 218 76.6
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.5e-81 306.6 219 75.3
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 3.8e-80 302.0 219 77.2
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 4.9e-80 301.6 217 75.6
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 1.9e-79 299.7 246 67.9
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 2.4e-79 299.3 217 74.2
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 4.2e-79 298.5 219 73.1
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.6e-78 296.6 217 73.7
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 2.1e-78 296.2 217 73.3
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 4.6e-78 295.0 217 73.3
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 7.9e-78 294.3 217 74.2
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.3e-77 293.5 224 71.9
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 5.1e-77 291.6 218 72.9
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 6.6e-77 291.2 156 93.6
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 6.6e-77 291.2 219 74.0
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.1e-76 290.4 219 70.3
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 4.3e-76 288.5 217 71.9
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 5.6e-76 288.1 208 72.1
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 5.6e-76 288.1 183 78.7
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 1.3e-75 287.0 218 72.9
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 2.1e-75 286.2 183 80.3
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 1.4e-74 283.5 220 67.3
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 1.4e-74 283.5 235 67.2
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 1.8e-74 283.1 219 69.9
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 4.0e-74 282.0 218 68.3
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 5.3e-74 281.6 218 68.8
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 5.3e-74 281.6 218 68.8
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 5.3e-74 281.6 215 70.7
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 5.3e-74 281.6 243 65.0
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 6.9e-74 281.2 218 68.8
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 9.0e-74 280.8 223 69.5
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.2e-73 280.4 156 89.7
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 1.2e-73 280.4 219 68.9
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 1.5e-73 280.0 220 68.2
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.5e-73 280.0 156 89.7
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 1.5e-73 280.0 227 67.4
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 2.0e-73 279.6 216 71.3
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 2.6e-73 279.3 218 68.3
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 2.6e-73 279.3 219 68.5
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 2.6e-73 279.3 214 69.2
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 2.6e-73 279.3 218 67.4
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 3.4e-73 278.9 218 67.4
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 5.8e-73 278.1 218 68.8
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 9.9e-73 277.3 227 67.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 1.3e-72 276.9 216 68.1
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 1.7e-72 276.6 223 70.0
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 4.9e-72 275.0 216 68.1
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 1.4e-71 273.5 224 67.9
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.4e-71 273.5 216 68.1
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 4.2e-71 271.9 222 66.7
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 4.2e-71 271.9 183 75.4
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.7e-70 269.2 228 64.9
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 6.0e-70 268.1 219 68.0
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 7.9e-70 267.7 218 67.0
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 7.9e-70 267.7 183 74.3
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 6.7e-69 264.6 216 67.1
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 1.5e-68 263.5 219 63.9
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 2.5e-68 262.7 296 54.7
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 4.3e-68 261.9 236 61.9
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 1.6e-67 260.0 170 81.2
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.7e-67 258.8 156 84.6
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 1.1e-66 257.3 180 71.7
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.8e-66 256.5 177 72.9
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 4.0e-66 255.4 209 66.5
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 6.9e-66 254.6 149 85.9
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 6.9e-66 254.6 218 62.8
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 3.4e-65 252.3 178 73.6
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 7.6e-65 251.1 221 61.5
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 7.6e-65 251.1 178 73.0
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 3.8e-64 248.8 218 61.9
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.5e-63 246.1 152 82.2
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 3.2e-63 245.7 183 69.9
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 7.9e-62 241.1 226 65.0
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.3e-61 240.4 182 67.0
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 5.1e-61 238.4 220 61.8
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 1.9e-60 236.5 152 82.2
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 4.3e-60 235.3 216 62.0
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 5.7e-60 235.0 179 68.2
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 1.3e-59 233.8 158 75.3
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.1e-58 230.7 153 77.8
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 9.0e-58 227.6 150 76.0
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 4.5e-57 225.3 166 69.3
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 5.9e-57 224.9 153 76.5
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 2.2e-56 223.0 151 74.2
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 2.2e-56 223.0 222 59.0
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 6.1e-54 214.9 155 68.4
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.3e-52 208.8 147 69.4
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 3.4e-49 199.1 181 57.5
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 5.9e-49 198.4 122 86.1
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.0e-45 187.6 179 59.2
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.4e-42 176.4 146 68.5
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 3.4e-41 172.6 213 53.5
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 5.0e-40 168.7 173 51.4
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 9.4e-39 164.5 132 67.4
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 1.8e-34 150.2 90 80.0
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 1.8e-34 150.2 127 64.6
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 5.0e-32 142.1 178 45.5
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.9e-31 140.2 180 45.0
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.6e-30 137.1 81 84.0
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 3.6e-30 136.0 79 84.8
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 8.2e-27 124.8 171 44.4
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.3e-24 117.5 80 75.0
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 5.5e-23 112.1 72 81.9
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 7.2e-23 111.7 72 77.8
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 5.2e-21 105.5 65 73.8
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 5.7e-20 102.1 99 59.6
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 6.3e-19 98.6 240 31.2
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 6.5e-16 88.6 83 65.1
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.6e-14 84.0 61 72.1
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 1.5e-12 77.4 62 66.1
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 3.7e-11 72.8 96 41.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 5.4e-10 68.9 66 51.5
MCO03G486 Micromonas commoda HOM05D006789 ORTHO05D008460 7.3e-07 58.5 229 26.6
Cfa010460 Carpinus fangiana HOM05D012552 ORTHO05D018926 8.0e-06 55.1 47 68.1


User provided reference genes

Program Settings