Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G122500 Theobroma cacao HOM05D014341 ORTHO05D011752 1.2e-165 586.6 330 100.0
Duzib114G0679 Durio zibethinus HOM05D014341 ORTHO05D011752 9.8e-56 221.5 315 47.3
Gohir.A05G285600 Gossypium hirsutum HOM05D014341 ORTHO05D011752 4.4e-32 142.9 282 36.2
Gorai.009G301700 Gossypium raimondii HOM05D014341 ORTHO05D011752 9.8e-32 141.7 282 40.1
Gohir.D05G286700 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.3e-31 141.4 282 40.1
COL.COLO4_16330 Corchorus olitorius HOM05D014341 ORTHO05D011752 6.4e-31 139.0 245 43.7
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 1.3e-28 131.3 108 59.3
Gohir.A05G395900 Gossypium hirsutum HOM05D014341 ORTHO05D011752 5.0e-28 129.4 132 51.5
Gohir.D04G019100 Gossypium hirsutum HOM05D014341 ORTHO05D011752 7.3e-27 125.6 100 61.0
Sabra08G0008700 Salix brachista HOM05D010059 ORTHO05D011752 2.5e-19 100.5 205 32.2
Cpa.g.sc54.45 Carica papaya HOM05D000881 ORTHO05D000666 8.9e-17 92.0 300 26.7
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 4.4e-16 89.7 273 27.8
Sabra08G0008400 Salix brachista HOM05D000881 ORTHO05D000666 1.3e-15 88.2 369 26.6
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 2.2e-15 87.4 121 38.8
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 3.7e-15 86.7 253 29.6
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 1.4e-14 84.7 357 26.1
Sp3g09000 Schrenkiella parvula HOM05D010059 ORTHO05D011752 1.4e-14 84.7 197 30.5
Phvul.005G011300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.9e-14 84.3 101 36.6
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 4.1e-14 83.2 328 25.9
Manes.07G083200 Manihot esculenta HOM05D000881 ORTHO05D000666 7.1e-14 82.4 175 32.0
AT3G10680 Arabidopsis thaliana HOM05D010059 ORTHO05D011752 9.2e-14 82.0 195 30.8
Duzib052G0145 Durio zibethinus HOM05D000881 ORTHO05D000666 9.2e-14 82.0 327 24.5
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 9.2e-14 82.0 296 26.4
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 1.2e-13 81.6 170 30.0
Lj3g0025880 Lotus japonicus HOM05D000881 ORTHO05D000666 1.6e-13 81.3 190 31.6
Thecc.02G162200 Theobroma cacao HOM05D000881 ORTHO05D000666 1.6e-13 81.3 333 25.5
BraA01t04230Z Brassica rapa HOM05D010059 ORTHO05D011752 2.1e-13 80.9 191 28.8
CiPaw.14G037000 Carya illinoinensis HOM05D000881 ORTHO05D000666 2.1e-13 80.9 207 30.0
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 2.7e-13 80.5 101 35.6
BolC1t05368H Brassica oleracea HOM05D010059 ORTHO05D011752 4.6e-13 79.7 210 25.2
Carub.0003s0991 Capsella rubella HOM05D010059 ORTHO05D011752 6.0e-13 79.3 204 28.4
Aa31LG11G5820 Aethionema arabicum HOM05D000881 ORTHO05D000666 1.3e-12 78.2 100 30.0
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.3e-12 78.2 345 27.5
CARHR085260 Cardamine hirsuta HOM05D010059 ORTHO05D011752 3.0e-12 77.0 211 28.9
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 3.0e-12 77.0 276 29.0
AL3G22150 Arabidopsis lyrata HOM05D010059 ORTHO05D011752 3.9e-12 76.6 192 28.1
Potri.008G013800 Populus trichocarpa HOM05D000881 ORTHO05D000666 3.9e-12 76.6 346 28.3
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 5.1e-12 76.3 101 34.7
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 5.1e-12 76.3 108 36.1
BraA02t04826Z Brassica rapa HOM05D000881 ORTHO05D000666 6.6e-12 75.9 112 34.8
Potri.010G245500 Populus trichocarpa HOM05D000881 ORTHO05D000666 6.6e-12 75.9 175 30.9
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 8.6e-12 75.5 293 29.7
BcaC05g29438 Brassica carinata HOM05D010059 ORTHO05D011752 8.6e-12 75.5 269 26.0
Nn4g22126 Nelumbo nucifera HOM05D000881 ORTHO05D000666 8.6e-12 75.5 294 25.9
Thhalv10020532m.g Eutrema salsugineum HOM05D010059 ORTHO05D011752 1.1e-11 75.1 194 26.8
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 1.5e-11 74.7 97 34.0
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 1.9e-11 74.3 112 33.9
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.9e-11 74.3 291 23.0
BcaB05g21742 Brassica carinata HOM05D000881 ORTHO05D000666 2.5e-11 73.9 121 32.2
BcaC03g13137 Brassica carinata HOM05D000881 ORTHO05D000666 2.5e-11 73.9 112 33.9
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 2.5e-11 73.9 113 31.0
C02p02100 Brassica napus HOM05D000881 ORTHO05D000666 2.5e-11 73.9 112 33.9
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 2.5e-11 73.9 113 31.0
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 2.5e-11 73.9 107 32.7
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 2.5e-11 73.9 113 29.2
arahy.Tifrunner.gnm1.ann1.GLLM5N Arachis hypogaea HOM05D000881 ORTHO05D000666 3.3e-11 73.6 120 35.8
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 3.3e-11 73.6 206 28.2
SalBow8G2546 Salvia bowleyana HOM05D000881 ORTHO05D000666 3.3e-11 73.6 146 30.1
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 4.3e-11 73.2 113 31.0
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 4.3e-11 73.2 113 31.0
Sopen01g040680 Solanum pennellii HOM05D000881 ORTHO05D000666 4.3e-11 73.2 160 31.2
Atru.chr12.1161 Acer truncatum HOM05D000881 ORTHO05D000666 5.6e-11 72.8 292 25.0
Gohir.D02G187100 Gossypium hirsutum HOM05D010059 ORTHO05D000666 5.6e-11 72.8 95 34.7
Gorai.005G209500 Gossypium raimondii HOM05D010059 ORTHO05D000666 5.6e-11 72.8 95 34.7
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 7.3e-11 72.4 167 32.3
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 9.6e-11 72.0 371 24.0
Lalb_Chr19g0132461 Lupinus albus HOM05D000881 ORTHO05D000666 1.2e-10 71.6 136 30.1
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 1.2e-10 71.6 163 30.7
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 1.6e-10 71.2 113 28.3
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 1.6e-10 71.2 283 24.4
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.6e-10 71.2 98 33.7
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 2.1e-10 70.9 89 32.6
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 2.1e-10 70.9 146 30.8
THA.LOC104816481 Tarenaya hassleriana HOM05D010059 ORTHO05D011752 2.1e-10 70.9 174 29.3
arahy.Tifrunner.gnm1.ann1.9D7AF0 Arachis hypogaea HOM05D000881 ORTHO05D000666 2.8e-10 70.5 120 35.0
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 2.8e-10 70.5 113 30.1
SalBow6G4118 Salvia bowleyana HOM05D000881 ORTHO05D000666 2.8e-10 70.5 86 38.4
Solyc01g096960.3 Solanum lycopersicum HOM05D000881 ORTHO05D000666 2.8e-10 70.5 159 32.1
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 3.6e-10 70.1 92 34.8
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 4.7e-10 69.7 144 32.6
QL04p049805 Quercus lobata HOM05D000881 ORTHO05D000666 4.7e-10 69.7 370 24.1
TPR.G8594 Trifolium pratense HOM05D000881 ORTHO05D000666 4.7e-10 69.7 167 29.3
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 6.2e-10 69.3 364 23.9
Hund18820 Selenicereus undatus HOM05D000881 ORTHO05D000666 6.2e-10 69.3 103 33.0
TPR.G144 Trifolium pratense HOM05D000881 ORTHO05D000666 6.2e-10 69.3 131 31.3
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 8.1e-10 68.9 113 28.3
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 1.1e-09 68.6 101 31.7
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.1e-09 68.6 292 25.0
Glyma.15G216700 Glycine max HOM05D000881 ORTHO05D000666 1.1e-09 68.6 168 27.4
Lalb_Chr18g0049011 Lupinus albus HOM05D000881 ORTHO05D000080 1.1e-09 68.6 149 29.5
CANSAT56G0189 Cannabis sativa HOM05D000881 ORTHO05D000666 1.4e-09 68.2 181 30.9
Migut.D00720 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.4e-09 68.2 90 34.4
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.4e-09 68.2 179 29.6
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.4e-09 68.2 182 29.7
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 1.4e-09 68.2 87 35.6
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 1.8e-09 67.8 102 34.3
C09p71880 Brassica napus HOM05D000881 ORTHO05D000666 1.8e-09 67.8 102 31.4
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 1.8e-09 67.8 102 34.3
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 1.8e-09 67.8 178 29.2
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 1.8e-09 67.8 336 28.9
Medtr8g046245 Medicago truncatula HOM05D000881 ORTHO05D000666 1.8e-09 67.8 168 28.6
Psat5g229840 Pisum sativum HOM05D000881 ORTHO05D000666 1.8e-09 67.8 161 29.2
TWI63G0669 Tripterygium wilfordii HOM05D010059 ORTHO05D000666 1.8e-09 67.8 103 33.0
DCAR_011554 Daucus carota HOM05D000881 ORTHO05D000666 2.4e-09 67.4 127 28.3
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 3.1e-09 67.0 334 25.4
TAR458G0002 Trochodendron aralioides HOM05D000881 ORTHO05D000666 3.1e-09 67.0 149 30.9
Lj3g0025354 Lotus japonicus HOM05D000881 ORTHO05D000666 4.0e-09 66.6 101 32.7
Nn2g14496 Nelumbo nucifera HOM05D000881 ORTHO05D000666 4.0e-09 66.6 111 35.1
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 4.0e-09 66.6 127 30.7
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 5.2e-09 66.2 125 33.6
Nitab4.5_0001611g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 6.8e-09 65.9 376 25.5
Phvul.011G184300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 6.8e-09 65.9 166 28.3
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 6.8e-09 65.9 146 27.4
Sopen01g040670 Solanum pennellii HOM05D000881 ORTHO05D000666 8.9e-09 65.5 160 30.0
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 1.5e-08 64.7 162 25.3
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 2.0e-08 64.3 100 30.0
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 2.0e-08 64.3 162 25.3
Gohir.A08G007500 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.0e-08 64.3 90 33.3
Dinv05245 Davidia involucrata HOM05D000881 ORTHO05D000666 2.6e-08 63.9 163 28.2
Glyma.08G230000 Glycine max HOM05D000881 ORTHO05D000666 2.6e-08 63.9 146 29.5
Lsat_1_v5_gn_4_63061 Lactuca sativa HOM05D000881 ORTHO05D000666 2.6e-08 63.9 178 27.0
Oeu038472.1 Olea europaea HOM05D000881 ORTHO05D000666 3.4e-08 63.5 342 25.4
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 4.4e-08 63.2 312 25.0
MELO3C012317.2 Cucumis melo HOM05D018703 ORTHO05D000666 4.4e-08 63.2 98 34.7
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.8e-08 62.8 119 30.3
Solyc01g096980.2 Solanum lycopersicum HOM05D000881 ORTHO05D000666 5.8e-08 62.8 175 28.0
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 5.8e-08 62.8 105 31.4
Ah.08g222530 Amaranthus hybridus HOM05D000881 ORTHO05D000666 7.6e-08 62.4 87 33.3
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 7.6e-08 62.4 129 27.1
HanXRQChr04g0102121 Helianthus annuus HOM05D000881 ORTHO05D000666 7.6e-08 62.4 176 27.8
Hund20971 Selenicereus undatus HOM05D000881 ORTHO05D000666 7.6e-08 62.4 91 31.9
AUR62020187 Chenopodium quinoa HOM05D000881 ORTHO05D000666 9.9e-08 62.0 111 31.5
Gorai.008G190800 Gossypium raimondii HOM05D000881 ORTHO05D000666 9.9e-08 62.0 128 30.5
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 9.9e-08 62.0 322 23.3
Potri.004G191101 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.3e-07 61.6 171 25.7
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.7e-07 61.2 294 22.8
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 1.7e-07 61.2 120 29.2
HanXRQChr15g0470771 Helianthus annuus HOM05D000881 ORTHO05D000666 2.2e-07 60.8 97 30.9
Nitab4.5_0004014g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 2.2e-07 60.8 387 23.5
Oeu022198.1 Olea europaea HOM05D000881 ORTHO05D000666 2.2e-07 60.8 113 30.1
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 2.2e-07 60.8 340 24.4
AUR62001592 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.9e-07 60.5 100 26.0
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 2.9e-07 60.5 302 28.8
Gohir.A12G175310 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.9e-07 60.5 128 29.7
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 2.9e-07 60.5 151 30.5
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 2.9e-07 60.5 111 31.5
CiPaw.11G038600 Carya illinoinensis HOM05D000881 ORTHO05D000666 3.8e-07 60.1 124 25.8
Peaxi162Scf00647g00136 Petunia axillaris HOM05D000881 ORTHO05D000666 3.8e-07 60.1 263 25.1
Sc04g0002460 Simmondsia chinensis HOM05D000881 ORTHO05D000666 3.8e-07 60.1 122 29.5
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 3.8e-07 60.1 272 27.2
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 6.4e-07 59.3 330 30.3
Eucgr.J00308 Eucalyptus grandis HOM05D000881 ORTHO05D000666 6.4e-07 59.3 271 25.5
Gohir.D12G178364 Gossypium hirsutum HOM05D000881 ORTHO05D000666 8.4e-07 58.9 128 28.9
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 8.4e-07 58.9 175 27.4
Psat4g142320 Pisum sativum HOM05D000881 ORTHO05D000666 8.4e-07 58.9 144 27.1
Atru.chr3.3015 Acer truncatum HOM05D000881 ORTHO05D000666 1.1e-06 58.5 135 30.4
Oeu012471.1 Olea europaea HOM05D000881 ORTHO05D000666 1.1e-06 58.5 377 24.4
TWI75G0903 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.1e-06 58.5 277 22.7
Rhsim01G0197700 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.4e-06 58.2 86 33.7
Thecc.03G079700 Theobroma cacao HOM05D000881 ORTHO05D000666 1.4e-06 58.2 143 26.6
AUR62001593 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.9e-06 57.8 176 25.6
Medtr4g107860 Medicago truncatula HOM05D000881 ORTHO05D000666 1.9e-06 57.8 109 29.4
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 1.9e-06 57.8 91 33.0
SGA_v2.0_scaffold29G12123 Striga asiatica HOM05D000881 ORTHO05D000666 1.9e-06 57.8 182 25.8
Thecc.09G265900 Theobroma cacao HOM05D000881 ORTHO05D000666 1.9e-06 57.8 123 28.5
VMungo0251G0666 Vigna mungo HOM05D000907 ORTHO05D000753 1.9e-06 57.8 206 23.8
CSS0047115 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.4e-06 57.4 87 31.0
Duzib068G0091 Durio zibethinus HOM05D000881 ORTHO05D000666 2.4e-06 57.4 104 29.8
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 2.4e-06 57.4 299 29.1
Potri.004G191200 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.4e-06 57.4 158 28.5
Rhsim01G0121400 Rhododendron simsii HOM05D000881 ORTHO05D000666 2.4e-06 57.4 368 23.6
Carub.0004s0767 Capsella rubella HOM05D000881 ORTHO05D000666 4.2e-06 56.6 104 30.8
CARHR119520 Cardamine hirsuta HOM05D000881 ORTHO05D000666 4.2e-06 56.6 102 30.4
A01p41550 Brassica napus HOM05D010059 ORTHO05D011752 5.4e-06 56.2 189 22.8
Phvul.007G250400 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 5.4e-06 56.2 136 27.2
ClCG05G022090 Citrullus lanatus HOM05D018703 ORTHO05D022370 7.1e-06 55.8 145 26.2
Eucgr.K02451 Eucalyptus grandis HOM05D000881 ORTHO05D000666 9.3e-06 55.5 87 32.2


User provided reference genes

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