Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G121600 Theobroma cacao HOM05D000808 ORTHO05D000863 8.5e-60 233.4 113 100.0
Thecc.02G094800 Theobroma cacao HOM05D000808 ORTHO05D000863 1.6e-29 132.9 78 80.8
TWI59G1229 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 3.2e-14 82.0 79 54.4
QL05p039911 Quercus lobata HOM05D000808 ORTHO05D000863 4.1e-14 81.6 74 51.4
Atru.chr4.1058 Acer truncatum HOM05D000808 ORTHO05D000863 1.6e-13 79.7 74 52.7
Atru.chr4.1041 Acer truncatum HOM05D000808 ORTHO05D000863 7.8e-13 77.4 73 52.1
Cfa015708 Carpinus fangiana HOM05D000808 ORTHO05D000863 1.3e-12 76.6 75 53.3
Haze_00806 Corylus avellana HOM05D000808 ORTHO05D000863 5.0e-12 74.7 78 53.8
Atru.chr4.1031 Acer truncatum HOM05D000808 ORTHO05D000863 6.6e-12 74.3 74 54.1
Haze_00807 Corylus avellana HOM05D000808 ORTHO05D000863 8.6e-12 73.9 75 52.0
Hma1.2p1_0005F.1_g004470 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 1.1e-11 73.6 77 42.9
Rhsim03G0031800 Rhododendron simsii HOM05D000808 ORTHO05D000863 1.1e-11 73.6 78 48.7
Atru.chr4.1052 Acer truncatum HOM05D000808 ORTHO05D000863 1.5e-11 73.2 74 52.7
Hma1.2p1_0005F.1_g004480 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 1.5e-11 73.2 77 44.2
Prupe.4G166700 Prunus persica HOM05D000808 ORTHO05D000863 3.3e-11 72.0 74 50.0
Rhsim03G0031700 Rhododendron simsii HOM05D000808 ORTHO05D000863 3.3e-11 72.0 79 50.6
Dinv01637 Davidia involucrata HOM05D000808 ORTHO05D000863 4.3e-11 71.6 74 44.6
Lj2A392T41 Lonicera japonica HOM05D000808 ORTHO05D000863 4.3e-11 71.6 78 44.9
Nitab4.5_0000677g0070 Nicotiana tabacum HOM05D000808 ORTHO05D000863 1.6e-10 69.7 81 46.9
Prupe.4G157000 Prunus persica HOM05D000808 ORTHO05D000863 1.6e-10 69.7 74 48.6
Prupe.4G166600 Prunus persica HOM05D000808 ORTHO05D000863 1.6e-10 69.7 81 48.1
ClCG11G017290 Citrullus lanatus HOM05D000808 ORTHO05D000863 3.6e-10 68.6 78 47.4
MD11G1261400 Malus domestica HOM05D000808 ORTHO05D000863 3.6e-10 68.6 74 45.9
TWI38G2192 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 3.6e-10 68.6 78 44.9
vmacro20340 Vaccinium macrocarpon HOM05D000808 ORTHO05D426772 6.2e-10 67.8 111 39.6
vmacro21948 Vaccinium macrocarpon HOM05D000808 ORTHO05D000863 6.2e-10 67.8 75 48.0
Atru.chr4.1032 Acer truncatum HOM05D000808 ORTHO05D000863 8.1e-10 67.4 75 52.0
Atru.chr4.1065 Acer truncatum HOM05D000808 ORTHO05D000863 8.1e-10 67.4 75 52.0
MD08G1210800 Malus domestica HOM05D000808 ORTHO05D000863 8.1e-10 67.4 75 45.3
Nitab4.5_0000562g0040 Nicotiana tabacum HOM05D000808 ORTHO05D000863 8.1e-10 67.4 78 44.9
Prupe.5G049700 Prunus persica HOM05D000808 ORTHO05D000863 8.1e-10 67.4 74 45.9
vmacro21949 Vaccinium macrocarpon HOM05D000808 ORTHO05D000863 8.1e-10 67.4 79 45.6
Aqoxy6G01528 Aquilegia oxysepala HOM05D000808 ORTHO05D000863 1.1e-09 67.0 80 43.8
Prupe.4G167000 Prunus persica HOM05D000808 ORTHO05D000863 1.1e-09 67.0 85 43.5
Peaxi162Scf00002g00375 Petunia axillaris HOM05D000808 ORTHO05D000863 1.8e-09 66.2 79 46.8
MELO3C025655.2 Cucumis melo HOM05D000808 ORTHO05D000863 2.3e-09 65.9 78 46.2
Rhsim03G0031600 Rhododendron simsii HOM05D000808 ORTHO05D000863 2.3e-09 65.9 79 46.8
Sed0025767 Sechium edule HOM05D000808 ORTHO05D000863 2.3e-09 65.9 78 46.2
CsaV3_4G032940 Cucumis sativus L. HOM05D000808 ORTHO05D000863 4.0e-09 65.1 78 46.2
DCAR_020530 Daucus carota HOM05D000808 ORTHO05D000863 4.0e-09 65.1 77 45.5
TWI34G0216 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 4.0e-09 65.1 64 54.7
PGSC0003DMG400008165 Solanum tuberosum HOM05D000808 ORTHO05D000863 5.2e-09 64.7 105 36.2
Prupe.4G166900 Prunus persica HOM05D000808 ORTHO05D000863 8.9e-09 63.9 90 40.0
CAN.G424.11 Capsicum annuum HOM05D000808 ORTHO05D000863 1.2e-08 63.5 107 36.4
Solyc10g079180.2 Solanum lycopersicum HOM05D000808 ORTHO05D000863 1.2e-08 63.5 78 44.9
Sopen10g029830 Solanum pennellii HOM05D000808 ORTHO05D000863 1.2e-08 63.5 78 44.9
TWI38G1599 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 1.2e-08 63.5 79 41.8
TAR381G0725 Trochodendron aralioides HOM05D000808 ORTHO05D000863 1.2e-08 63.5 68 44.1
TAR381G1129 Trochodendron aralioides HOM05D000808 ORTHO05D000863 1.2e-08 63.5 68 44.1
CANSAT54G1948 Cannabis sativa HOM05D000808 ORTHO05D000863 1.5e-08 63.2 107 38.3
MD16G1277900 Malus domestica HOM05D000808 ORTHO05D000863 1.5e-08 63.2 87 39.1
QL05p054725 Quercus lobata HOM05D000808 ORTHO05D000863 1.5e-08 63.2 74 48.6
Actinidia39185 Actinidia chinensis HOM05D000808 ORTHO05D000863 2.0e-08 62.8 79 41.8
TAR381G0386 Trochodendron aralioides HOM05D000808 ORTHO05D000863 2.0e-08 62.8 79 39.2
TAR381G0516 Trochodendron aralioides HOM05D000808 ORTHO05D000863 2.0e-08 62.8 79 39.2
TWI53G1506 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 2.6e-08 62.4 79 43.0
Sopen12g012040 Solanum pennellii HOM05D000808 ORTHO05D000863 3.4e-08 62.0 78 39.7
Lj7C557T18 Lonicera japonica HOM05D000808 ORTHO05D000863 4.4e-08 61.6 77 44.2
QL05p054758 Quercus lobata HOM05D000808 ORTHO05D000863 4.4e-08 61.6 74 48.6
Cc01_g15450 Coffea canephora HOM05D000808 ORTHO05D000863 5.8e-08 61.2 80 43.8
Atru.chr4.1037 Acer truncatum HOM05D000808 ORTHO05D000863 7.5e-08 60.8 74 40.5
Potri.011G102200 Populus trichocarpa HOM05D000808 ORTHO05D000863 7.5e-08 60.8 78 42.3
FvH4_3g11340 Fragaria vesca HOM05D000808 ORTHO05D000863 1.3e-07 60.1 75 45.3
FAN16G2330 Fragaria x ananassa HOM05D000808 ORTHO05D000863 1.3e-07 60.1 75 45.3
RcHm_v2.0_Chr5g0018291 Rosa chinensis HOM05D000808 ORTHO05D000863 1.3e-07 60.1 75 48.0
CSS0018946 Camellia sinensis var. sinensis HOM05D000808 ORTHO05D000863 1.7e-07 59.7 81 38.3
CANSAT35G2030 Cannabis sativa HOM05D000808 ORTHO05D000863 1.7e-07 59.7 103 36.9
DCAR_020531 Daucus carota HOM05D000808 ORTHO05D000863 1.7e-07 59.7 78 43.6
Atru.chr4.1061 Acer truncatum HOM05D000808 ORTHO05D000863 2.2e-07 59.3 74 40.5
Sed0019826 Sechium edule HOM05D000808 ORTHO05D000863 2.2e-07 59.3 78 41.0
Aqoxy6G01525 Aquilegia oxysepala HOM05D000808 ORTHO05D000863 2.9e-07 58.9 52 51.9
Dinv38819 Davidia involucrata HOM05D000808 ORTHO05D000863 2.9e-07 58.9 77 39.0
Aqoxy2G02106 Aquilegia oxysepala HOM05D000808 ORTHO05D000863 3.7e-07 58.5 52 50.0
CAN.G243.3 Capsicum annuum HOM05D000808 ORTHO05D000863 3.7e-07 58.5 80 37.5
Cpa.g.sc14.253 Carica papaya HOM05D000808 ORTHO05D000863 3.7e-07 58.5 79 41.8
FAN25G0311 Fragaria x ananassa HOM05D000808 ORTHO05D000863 3.7e-07 58.5 75 46.7
PGSC0003DMG400019373 Solanum tuberosum HOM05D000808 ORTHO05D000863 3.7e-07 58.5 105 33.3
Cpa.g.sc77.28 Carica papaya HOM05D000808 ORTHO05D000863 6.4e-07 57.8 80 41.2
Lalb_Chr09g0322561 Lupinus albus HOM05D000808 ORTHO05D000863 6.4e-07 57.8 79 38.0
Cfa019554 Carpinus fangiana HOM05D000808 ORTHO05D000863 8.3e-07 57.4 78 46.2
FAN21G1066 Fragaria x ananassa HOM05D000808 ORTHO05D000863 8.3e-07 57.4 75 45.3
Peaxi162Scf00592g00001 Petunia axillaris HOM05D000808 ORTHO05D000863 8.3e-07 57.4 74 40.5
Sed0011033 Sechium edule HOM05D000808 ORTHO05D000863 8.3e-07 57.4 74 43.2
TAR629G0866 Trochodendron aralioides HOM05D000808 ORTHO05D000863 8.3e-07 57.4 74 43.2
CSS0005718 Camellia sinensis var. sinensis HOM05D000808 ORTHO05D000863 1.1e-06 57.0 79 40.5
Actinidia22176 Actinidia chinensis HOM05D000808 ORTHO05D000863 1.4e-06 56.6 51 49.0
Cfa015709 Carpinus fangiana HOM05D000808 ORTHO05D000863 1.4e-06 56.6 79 46.8
Hma1.2p1_0619F.1_g190420 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 1.4e-06 56.6 73 39.7
Potri.001G381000 Populus trichocarpa HOM05D000808 ORTHO05D000863 1.4e-06 56.6 78 38.5
Cre06.g256300 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D000863 1.9e-06 56.2 89 42.7
COL.COLO4_22114 Corchorus olitorius HOM05D000808 ORTHO05D000863 1.9e-06 56.2 77 39.0
Haze_09313 Corylus avellana HOM05D000808 ORTHO05D000863 1.9e-06 56.2 82 43.9
FAN11G0867 Fragaria x ananassa HOM05D000808 ORTHO05D000863 1.9e-06 56.2 75 44.0
Oeu032361.1 Olea europaea HOM05D000808 ORTHO05D000863 1.9e-06 56.2 78 39.7
QL05p054694 Quercus lobata HOM05D000808 ORTHO05D000863 1.9e-06 56.2 70 44.3
CANSAT80G2795 Cannabis sativa HOM05D000808 ORTHO05D000863 2.4e-06 55.8 78 37.2
FvH4_3g11080 Fragaria vesca HOM05D000808 ORTHO05D000863 2.4e-06 55.8 75 44.0
Solyc01g081000.3 Solanum lycopersicum HOM05D000808 ORTHO05D000863 2.4e-06 55.8 77 36.4
Sopen01g032580 Solanum pennellii HOM05D000808 ORTHO05D000863 2.4e-06 55.8 77 36.4
vmacro21950 Vaccinium macrocarpon HOM05D000808 ORTHO05D000863 2.4e-06 55.8 50 56.0
FAN25G2598 Fragaria x ananassa HOM05D000808 ORTHO05D000863 3.2e-06 55.5 75 44.0
Lj4C198T0 Lonicera japonica HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 35.4
Nitab4.5_0000110g0460 Nicotiana tabacum HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 36.7
Potri.009G021300 Populus trichocarpa HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 39.2
QL02p007794 Quercus lobata HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 40.5
Rhsim02G0246600 Rhododendron simsii HOM05D000808 ORTHO05D000863 3.2e-06 55.5 77 40.3
Sabra16G0251200 Salix brachista HOM05D000808 ORTHO05D000863 3.2e-06 55.5 78 37.2
Sopen04g033680 Solanum pennellii HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 34.2
PGSC0003DMG400001094 Solanum tuberosum HOM05D000808 ORTHO05D000863 3.2e-06 55.5 77 39.0
TWI09G0154 Tripterygium wilfordii HOM05D000808 ORTHO05D000863 3.2e-06 55.5 79 39.2
vmacro11336 Vaccinium macrocarpon HOM05D000808 ORTHO05D000863 3.2e-06 55.5 77 40.3
Atru.chr11.2175 Acer truncatum HOM05D000808 ORTHO05D000863 4.1e-06 55.1 74 43.2
Atru.chr3.1862 Acer truncatum HOM05D000808 ORTHO05D000863 4.1e-06 55.1 74 43.2
AagrBONN_evm.TU.Sc2ySwM_344.387 Anthoceros agrestis HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 38.0
arahy.Tifrunner.gnm1.ann1.2J0DRT Arachis hypogaea HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 36.7
arahy.Tifrunner.gnm1.ann1.5G68FD Arachis hypogaea HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 36.7
CSS0044045 Camellia sinensis var. sinensis HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 38.0
CANSAT80G1469 Cannabis sativa HOM05D000808 ORTHO05D000863 4.1e-06 55.1 78 38.5
ClCG11G017410 Citrullus lanatus HOM05D000808 ORTHO05D000863 4.1e-06 55.1 74 41.9
ClCG11G017420 Citrullus lanatus HOM05D000808 ORTHO05D000863 4.1e-06 55.1 71 43.7
SMO358G0383 Selaginella moellendorffii HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 39.2
Solyc04g080090.4 Solanum lycopersicum HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 34.2
Solyc12g005190.3 Solanum lycopersicum HOM05D000808 ORTHO05D000863 4.1e-06 55.1 77 40.3
Sopen12g001180 Solanum pennellii HOM05D000808 ORTHO05D000863 4.1e-06 55.1 77 40.3
PGSC0003DMG400005149 Solanum tuberosum HOM05D000808 ORTHO05D000863 4.1e-06 55.1 79 34.2
CsaV3_4G033070 Cucumis sativus L. HOM05D000808 ORTHO05D000863 5.4e-06 54.7 74 40.5
Oeu037893.1 Olea europaea HOM05D000808 ORTHO05D000863 5.4e-06 54.7 77 39.0
Phvul.003G252300 Phaseolus vulgaris HOM05D000808 ORTHO05D000863 5.4e-06 54.7 77 39.0
Solyc12g089090.2 Solanum lycopersicum HOM05D000808 ORTHO05D000863 5.4e-06 54.7 79 38.0
Sopen12g030970 Solanum pennellii HOM05D000808 ORTHO05D000863 5.4e-06 54.7 79 38.0
PGSC0003DMG402015455 Solanum tuberosum HOM05D000808 ORTHO05D000863 5.4e-06 54.7 79 38.0
GSVIVG01019004001 Vitis vinifera HOM05D000808 ORTHO05D000863 5.4e-06 54.7 79 38.0
AL7G38190 Arabidopsis lyrata HOM05D000808 ORTHO05D000863 7.1e-06 54.3 77 39.0
CAN.G1139.9 Capsicum annuum HOM05D000808 ORTHO05D000863 7.1e-06 54.3 79 38.0
CAN.G700.5 Capsicum annuum HOM05D000808 ORTHO05D000863 7.1e-06 54.3 74 37.8
Hma1.2p1_0905F.1_g235330 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 7.1e-06 54.3 79 39.2
Nitab4.5_0003246g0040 Nicotiana tabacum HOM05D000808 ORTHO05D000863 7.1e-06 54.3 79 36.7
Nitab4.5_0004600g0020 Nicotiana tabacum HOM05D000808 ORTHO05D000863 7.1e-06 54.3 79 38.0
SGA_v2.0_scaffold276G46654 Striga asiatica HOM05D000808 ORTHO05D000863 7.1e-06 54.3 77 40.3
GSVIVG01009670001 Vitis vinifera HOM05D000808 ORTHO05D000863 7.1e-06 54.3 79 38.0
CANSAT25G2368 Cannabis sativa HOM05D000808 ORTHO05D000863 9.2e-06 53.9 78 37.2
CiPaw.01G034900 Carya illinoinensis HOM05D000808 ORTHO05D000863 9.2e-06 53.9 79 38.0
DCAR_017242 Daucus carota HOM05D000808 ORTHO05D000863 9.2e-06 53.9 79 35.4
Duzib147G1697 Durio zibethinus HOM05D000808 ORTHO05D000863 9.2e-06 53.9 79 36.7
Migut.J01695 Erythranthe guttata HOM05D000808 ORTHO05D000863 9.2e-06 53.9 77 42.9
Hma1.2p1_0691F.1_g204115 Hydrangea macrophylla HOM05D000808 ORTHO05D000863 9.2e-06 53.9 80 40.0
Lj7P559T47 Lonicera japonica HOM05D000808 ORTHO05D000863 9.2e-06 53.9 99 37.4
Nitab4.5_0002296g0020 Nicotiana tabacum HOM05D000808 ORTHO05D000863 9.2e-06 53.9 79 38.0


User provided reference genes

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