Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 2.3e-58 228.8 124 100.0
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 2.9e-53 211.8 130 91.5
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 8.4e-53 210.3 130 90.8
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 3.2e-52 208.4 128 90.6
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 3.5e-51 204.9 130 86.9
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 7.9e-51 203.8 128 87.5
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 1.3e-50 203.0 130 86.2
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 2.3e-50 202.2 130 86.2
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 6.7e-50 200.7 128 86.7
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 1.5e-49 199.5 130 86.2
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 1.9e-49 199.1 130 83.8
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 4.3e-49 198.0 128 85.2
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 4.3e-49 198.0 128 85.2
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 4.3e-49 198.0 130 84.6
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 7.4e-49 197.2 128 85.2
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 7.4e-49 197.2 130 83.8
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 9.7e-49 196.8 125 86.4
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 9.7e-49 196.8 128 84.4
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 1.3e-48 196.4 130 83.8
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 3.7e-48 194.9 128 83.6
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 4.8e-48 194.5 128 82.8
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 4.8e-48 194.5 130 83.8
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 6.3e-48 194.1 130 83.1
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 8.2e-48 193.7 130 82.3
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 1.1e-47 193.4 128 82.0
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 1.1e-47 193.4 126 84.1
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 1.1e-47 193.4 126 84.1
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 1.4e-47 193.0 128 82.0
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.4e-47 193.0 122 86.9
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 1.4e-47 193.0 128 82.8
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 3.1e-47 191.8 130 81.5
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 3.1e-47 191.8 128 81.2
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 5.3e-47 191.0 128 82.0
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 6.9e-47 190.7 127 81.9
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 9.0e-47 190.3 130 80.0
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 9.0e-47 190.3 128 81.2
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 9.0e-47 190.3 130 80.8
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 1.2e-46 189.9 130 81.5
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 1.2e-46 189.9 130 81.5
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 1.5e-46 189.5 130 79.2
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 1.5e-46 189.5 128 81.2
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.0e-46 189.1 134 80.6
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 5.9e-46 187.6 130 80.0
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 5.9e-46 187.6 130 80.0
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 7.7e-46 187.2 128 81.2
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 7.7e-46 187.2 123 82.9
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.0e-45 186.8 130 79.2
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 1.7e-45 186.0 130 79.2
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 2.2e-45 185.7 128 79.7
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 2.2e-45 185.7 127 79.5
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 2.2e-45 185.7 130 80.0
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 3.8e-45 184.9 128 78.1
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 3.8e-45 184.9 128 78.9
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 3.8e-45 184.9 130 78.5
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 3.8e-45 184.9 130 78.5
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 5.0e-45 184.5 130 77.7
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 5.0e-45 184.5 130 78.5
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 6.5e-45 184.1 132 77.3
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 6.5e-45 184.1 128 79.7
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.4e-44 183.0 125 80.0
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.4e-44 183.0 130 76.2
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 4.2e-44 181.4 127 77.2
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 5.5e-44 181.0 123 80.5
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 7.2e-44 180.6 128 76.6
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 9.4e-44 180.3 130 76.2
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 9.4e-44 180.3 130 73.8
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 1.6e-43 179.5 130 76.2
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 1.6e-43 179.5 130 76.2
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 1.6e-43 179.5 130 75.4
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.6e-43 179.5 128 78.1
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.6e-43 179.5 127 75.6
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 2.1e-43 179.1 117 85.5
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 2.7e-43 178.7 130 75.4
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 4.6e-43 177.9 126 76.2
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 4.6e-43 177.9 119 80.7
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 1.0e-42 176.8 126 77.0
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 6.7e-42 174.1 130 73.1
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 8.8e-42 173.7 127 76.4
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 8.8e-42 173.7 130 73.1
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 1.1e-41 173.3 112 86.6
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 1.5e-41 172.9 128 73.4
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 2.0e-41 172.6 123 77.2
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 2.5e-41 172.2 121 78.5
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 3.3e-41 171.8 123 76.4
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 3.3e-41 171.8 123 76.4
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 3.3e-41 171.8 128 74.2
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 3.3e-41 171.8 125 78.4
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 3.3e-41 171.8 128 74.2
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 4.3e-41 171.4 171 60.2
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 2.2e-40 169.1 136 69.9
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 2.2e-40 169.1 119 77.3
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 1.1e-39 166.8 128 71.9
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 2.6e-38 162.2 120 74.2
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 8.5e-37 157.1 185 55.1
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 1.9e-36 156.0 95 87.4
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 4.2e-36 154.8 103 85.4
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.3e-32 143.3 116 69.8
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 6.3e-32 141.0 104 76.0
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 6.3e-32 141.0 128 59.4
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 1.4e-31 139.8 128 60.2
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 4.1e-31 138.3 98 77.6
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 4.5e-30 134.8 103 71.8
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 8.5e-29 130.6 96 75.0
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 1.6e-27 126.3 92 77.2
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 5.2e-26 121.3 119 54.6
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 1.5e-25 119.8 89 74.2
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 2.0e-25 119.4 92 73.9
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 4.4e-25 118.2 87 75.9
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 8.2e-24 114.0 93 69.9
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 1.8e-23 112.8 100 68.0
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 5.5e-20 101.3 61 85.2
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 2.1e-19 99.4 61 80.3
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 4.7e-19 98.2 99 52.5
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 1.0e-18 97.1 72 73.6
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 1.4e-18 96.7 61 80.3
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 1.4e-18 96.7 61 75.4
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 6.8e-18 94.4 57 91.2
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.5e-17 93.2 66 81.8
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 4.4e-17 91.7 62 77.4
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 3.7e-16 88.6 62 75.8
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 3.1e-15 85.5 70 64.3
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 8.8e-10 67.4 40 87.5
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 1.2e-09 67.0 64 51.6
Haze_19088 Corylus avellana HOM05D000287 ORTHO05D000319 2.6e-09 65.9 42 78.6
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 1.8e-07 59.7 110 36.4


User provided reference genes

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